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    RAB11FIP3 RAB11 family interacting protein 3 [ Homo sapiens (human) ]

    Gene ID: 9727, updated on 2-Nov-2024

    Summary

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    Official Symbol
    RAB11FIP3provided by HGNC
    Official Full Name
    RAB11 family interacting protein 3provided by HGNC
    Primary source
    HGNC:HGNC:17224
    See related
    Ensembl:ENSG00000090565 MIM:608738; AllianceGenome:HGNC:17224
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FIP3; CART1; FIP3-Rab11; Rab11-FIP3
    Summary
    Proteins of the large Rab GTPase family (see RAB1A; MIM 179508) have regulatory roles in the formation, targeting, and fusion of intracellular transport vesicles. RAB11FIP3 is one of many proteins that interact with and regulate Rab GTPases (Hales et al., 2001 [PubMed 11495908]).[supplied by OMIM, Mar 2008]
    Expression
    Broad expression in kidney (RPKM 33.4), brain (RPKM 8.0) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See RAB11FIP3 in Genome Data Viewer
    Location:
    16p13.3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (425649..523011)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (421839..526088)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (475649..573011)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10204 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6917 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6918 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:449109-449694 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:450865-451450 Neighboring gene NME/NM23 nucleoside diphosphate kinase 4 Neighboring gene 2,4-dienoyl-CoA reductase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:492123-492661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:495322-495822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:495823-496323 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:516240-516869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:516870-517498 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:532003-532508 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:534533-535038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:535039-535544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:537093-537971 Neighboring gene uncharacterized LOC107987417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:542303-542924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:544383-544961 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:544962-545539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:576271-576832 Neighboring gene long intergenic non-protein coding RNA 235 Neighboring gene calpain 15 Neighboring gene microRNA 5587

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. IKZF4/NONO-RAB11FIP3 axis promotes immune evasion in gastric cancer via facilitating PD-L1 endosome recycling.
      Title: IKZF4/NONO-RAB11FIP3 axis promotes immune evasion in gastric cancer via facilitating PD-L1 endosome recycling.
    2. Rac1-Rab11-FIP3 regulatory hub coordinates vesicle traffic with actin remodeling and T-cell activation
      Title: Rac1-Rab11-FIP3 regulatory hub coordinates vesicle traffic with actin remodeling and T-cell activation.
    3. RAB11FIP3 combines with Eps15 homology domain 1 to promote the endocytosis recycling of phosphorylation of epithelial growth factor receptor.
      Title: Increased Eps15 homology domain 1 and RAB11FIP3 expression regulate breast cancer progression via promoting epithelial growth factor receptor recycling.
    4. Rab11-FIP3 coordinates the interactions of ASAP1 and Rab11a with Rabin8.
      Title: The Arf and Rab11 effector FIP3 acts synergistically with ASAP1 to direct Rabin8 in ciliary receptor targeting.
    5. CART1 might be a cytoplasmic, testis-specific derepressor of RAR
      Title: A novel cytoplasmic adaptor for retinoic acid receptor (RAR) and thyroid receptor functions as a Derepressor of RAR in the absence of retinoic acid.
    6. FIP3 was identified as the first membrane-associated interacting-partner for DLIC-2.
      Title: Rab11-FIP3 binds dynein light intermediate chain 2 and its overexpression fragments the Golgi complex.
    7. Rab11-FIP3 is a Rab11-binding protein that regulates breast cancer cell motility by modulating the actin cytoskeleton.(325-41)
      Title: Rab11-FIP3 is a Rab11-binding protein that regulates breast cancer cell motility by modulating the actin cytoskeleton.
    8. Necessary for the structural integrity of the pericentrosomal endosomal recycling compartment.
      Title: Rab11-FIP3 is critical for the structural integrity of the endosomal recycling compartment.
    9. FIP3 is a scaffolding protein that, in addition to regulating endosome targeting to the cleavage furrow, also is required for Arf6 recruitment to the midbody during late telophase.
      Title: Molecular characterization of Rab11-FIP3 binding to ARF GTPases.
    10. FIP-3 and RAB11 protein complex regulates recycling endosomes targeting to the cleavage furrow during late cytokinesis.
      Title: The FIP3-Rab11 protein complex regulates recycling endosome targeting to the cleavage furrow during late cytokinesis.
    Submit: New GeneRIF Correction See all GeneRIFs (12)

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0665, PAC196A12.1, MU-MB-17.148

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dynein light intermediate chain binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables dynein light intermediate chain binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables molecular adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables molecular adaptor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein-containing complex binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-macromolecule adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein-macromolecule adaptor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables small GTPase binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables small GTPase binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables small GTPase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables small GTPase binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in early endosome to recycling endosome transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in endocytic recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endocytic recycling IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in negative regulation of adiponectin secretion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of cilium assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of mitotic cytokinetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein localization to cilium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein localization to cleavage furrow IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of cilium assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cytokinesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of cytokinesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of early endosome to recycling endosome transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of endocytic recycling IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of protein localization to centrosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in centriolar satellite IDA
    Inferred from Direct Assay
    more info
    		  
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cleavage furrow IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cleavage furrow IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		  
    is_active_in endocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endocytic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intercellular bridge IDA
    Inferred from Direct Assay
    more info
    		  
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    		  
    is_active_in midbody IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in midbody IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		  
    located_in postsynaptic recycling endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in recycling endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in recycling endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab11 family-interacting protein 3
    Names
    EF hands-containing Rab-interacting protein
    MU-MB-17.148
    RAB11 family interacting protein 3 (class II)
    arfophilin-1
    cytoplasmic adaptor for RAR and TR
    eferin
    NP_001135744.2
    NP_001357330.1
    NP_055515.1
    XP_005255771.1
    XP_005255772.1
    XP_005255774.1
    XP_005255775.1
    XP_011521066.1
    XP_011521067.1
    XP_016879396.1
    XP_047290915.1
    XP_047290916.1
    XP_054170469.1
    XP_054170470.1
    XP_054170471.1
    XP_054170472.1
    XP_054170473.1
    XP_054170474.1
    XP_054185167.1
    XP_054185168.1
    XP_054185169.1
    XP_054185170.1
    XP_054185171.1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142272.2 → NP_001135744.2  rab11 family-interacting protein 3 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AL049542, Z98882
      Related
      ENSP00000415919.1, ENST00000450428.5
      Conserved Domains (2) summary
      TIGR02168
      Location:160 → 432
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09457
      Location:406 → 446
      RBD-FIP; FIP domain

    2. NM_001370401.1 → NP_001357330.1  rab11 family-interacting protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL023881, AL049542, Z98882
      Consensus CDS
      CCDS92071.1
      UniProtKB/TrEMBL
      A0A0J9YWV4, X6RFI8
      Related
      ENSP00000399644.2, ENST00000434585.6
      Conserved Domains (4) summary
      PRK07764
      Location:3 → 223
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      TIGR02168
      Location:515 → 787
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09457
      Location:761 → 801
      RBD-FIP; FIP domain
      pfam13499
      Location:206 → 264
      EF-hand_7; EF-hand domain pair

    3. NM_014700.4 → NP_055515.1  rab11 family-interacting protein 3 isoform 1

      See identical proteins and their annotated locations for NP_055515.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL023881, BC051360, Z98882
      Consensus CDS
      CCDS32351.1
      UniProtKB/Swiss-Prot
      B0QYI8, B0QYT8, B1AHQ0, B4DEI7, B4DZR6, O75154, Q4VXV7, Q7Z5E9, Q9H155, Q9H1G0, Q9NUI0
      UniProtKB/TrEMBL
      A0A0J9YWV4, X6RFI8
      Related
      ENSP00000262305.4, ENST00000262305.9
      Conserved Domains (8) summary
      COG1842
      Location:459 → 674
      PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
      pfam09457
      Location:716 → 756
      RBD-FIP; FIP domain
      pfam05700
      Location:486 → 589
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
      pfam11262
      Location:540 → 631
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam13499
      Location:207 → 263
      EF-hand_7; EF-hand domain pair
      pfam15068
      Location:80 → 140
      FAM101; FAM101 family
      pfam16034
      Location:577 → 691
      JAKMIP_CC3; JAKMIP CC3 domain
      cl08302
      Location:206 → 264
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      425649..523011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017023907.2 → XP_016879396.1  rab11 family-interacting protein 3 isoform X1

    2. XM_005255717.4 → XP_005255774.1  rab11 family-interacting protein 3 isoform X4

      See identical proteins and their annotated locations for XP_005255774.1

      Conserved Domains (3) summary
      cd00051
      Location:206 → 264
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:207 → 263
      EF-hand_7; EF-hand domain pair
      pfam16214
      Location:85 → 220
      AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region

    3. XM_005255718.4 → XP_005255775.1  rab11 family-interacting protein 3 isoform X6

      See identical proteins and their annotated locations for XP_005255775.1

      Conserved Domains (3) summary
      cd00051
      Location:206 → 264
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:207 → 263
      EF-hand_7; EF-hand domain pair
      pfam16214
      Location:85 → 220
      AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region

    4. XM_047434960.1 → XP_047290916.1  rab11 family-interacting protein 3 isoform X7

    5. XM_011522765.3 → XP_011521067.1  rab11 family-interacting protein 3 isoform X5

      See identical proteins and their annotated locations for XP_011521067.1

      Conserved Domains (4) summary
      COG1842
      Location:162 → 377
      PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
      pfam09457
      Location:419 → 459
      RBD-FIP; FIP domain
      pfam05700
      Location:189 → 292
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
      pfam11262
      Location:243 → 334
      Tho2; Transcription factor/nuclear export subunit protein 2

    6. XM_011522764.3 → XP_011521066.1  rab11 family-interacting protein 3 isoform X3

      See identical proteins and their annotated locations for XP_011521066.1

      UniProtKB/Swiss-Prot
      O75154
      Conserved Domains (2) summary
      TIGR02168
      Location:205 → 477
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09457
      Location:451 → 491
      RBD-FIP; FIP domain

    7. XM_005255715.6 → XP_005255772.1  rab11 family-interacting protein 3 isoform X3

      See identical proteins and their annotated locations for XP_005255772.1

      UniProtKB/Swiss-Prot
      O75154
      Conserved Domains (2) summary
      TIGR02168
      Location:205 → 477
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09457
      Location:451 → 491
      RBD-FIP; FIP domain

    8. XM_047434959.1 → XP_047290915.1  rab11 family-interacting protein 3 isoform X3

    9. XM_005255714.2 → XP_005255771.1  rab11 family-interacting protein 3 isoform X2

      See identical proteins and their annotated locations for XP_005255771.1

      Conserved Domains (5) summary
      COG1842
      Location:208 → 423
      PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
      pfam09457
      Location:465 → 505
      RBD-FIP; FIP domain
      pfam05700
      Location:235 → 338
      BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
      pfam11262
      Location:289 → 380
      Tho2; Transcription factor/nuclear export subunit protein 2
      pfam16034
      Location:326 → 440
      JAKMIP_CC3; JAKMIP CC3 domain

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187610.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      24795..125679
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054329195.1 → XP_054185170.1  rab11 family-interacting protein 3 isoform X4

    2. XM_054329196.1 → XP_054185171.1  rab11 family-interacting protein 3 isoform X6

    3. XM_054329193.1 → XP_054185168.1  rab11 family-interacting protein 3 isoform X3

    4. XM_054329194.1 → XP_054185169.1  rab11 family-interacting protein 3 isoform X3

    5. XM_054329192.1 → XP_054185167.1  rab11 family-interacting protein 3 isoform X2

    RNA

    1. XR_008485623.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      421839..526088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054314494.1 → XP_054170469.1  rab11 family-interacting protein 3 isoform X1

    2. XM_054314498.1 → XP_054170473.1  rab11 family-interacting protein 3 isoform X4

    3. XM_054314499.1 → XP_054170474.1  rab11 family-interacting protein 3 isoform X6

    4. XM_054314496.1 → XP_054170471.1  rab11 family-interacting protein 3 isoform X3

    5. XM_054314497.1 → XP_054170472.1  rab11 family-interacting protein 3 isoform X3

    6. XM_054314495.1 → XP_054170470.1  rab11 family-interacting protein 3 isoform X2

    RNA

    1. XR_008484754.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O75154.1 GenPept UniProtKB/Swiss-Prot:O75154

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