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    MIR7-3HG MIR7-3 host gene [ Homo sapiens (human) ]

    Gene ID: 284424, updated on 22-Oct-2024

    Summary

    Official Symbol
    MIR7-3HGprovided by HGNC
    Official Full Name
    MIR7-3 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:30049
    See related
    Ensembl:ENSG00000176840 AllianceGenome:HGNC:30049
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Huh7; PGSF1; C19orf30; LINC00306; NCRNA00306; uc002mbe.2
    Expression
    Biased expression in brain (RPKM 5.9), testis (RPKM 2.8) and 4 other tissues See more
    NEW
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    Genomic context

    See MIR7-3HG in Genome Data Viewer
    Location:
    19p13.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (4769105..4772556)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (4754678..4758129)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (4769117..4772568)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372250 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9903 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9904 Neighboring gene tRNA-Gly (anticodon TCC) 1-1 Neighboring gene tRNA-Val (anticodon CAC) 3-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:4738040-4738540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:4738541-4739041 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:4742625-4743225 Neighboring gene Sharpr-MPRA regulatory region 10046 Neighboring gene Sharpr-MPRA regulatory region 15136 Neighboring gene microRNA 7-3 Neighboring gene MPRA-validated peak3287 silencer Neighboring gene uncharacterized LOC124904620 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:4791399-4792056 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:4792057-4792713 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:4792714-4793370 Neighboring gene fem-1 homolog A

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • MIR7-3 host gene (non-protein coding)
    • long intergenic non-protein coding RNA 306
    • pituitary gland specific factor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB058892, AB058893, BC117294, BE671262, DB051621
      Related
      ENST00000317292.10

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      4769105..4772556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      4754678..4758129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_174947.2: Suppressed sequence

      Description
      NM_174947.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.