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    LINC00958 long intergenic non-protein coding RNA 958 [ Homo sapiens (human) ]

    Gene ID: 100506305, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00958provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 958provided by HGNC
    Primary source
    HGNC:HGNC:48671
    See related
    Ensembl:ENSG00000251381 MIM:618335; AllianceGenome:HGNC:48671
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BLACAT2
    Expression
    Biased expression in esophagus (RPKM 3.0), urinary bladder (RPKM 2.3) and 9 other tissues See more
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    Genomic context

    See LINC00958 in Genome Data Viewer
    Location:
    11p15.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (12979534..12989548, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (13072068..13082085, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (13001081..13011095, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene TEA domain transcription factor 1 Neighboring gene uncharacterized LOC107984313 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:12849868-12850506 Neighboring gene VISTA enhancer hs1314 Neighboring gene Sharpr-MPRA regulatory region 11610 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:12897776-12898276 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:12902094-12903038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:12910458-12910966 Neighboring gene uncharacterized LOC124900312 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:12935478-12936342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:12936343-12937206 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3164 Neighboring gene RASSF10 divergent transcript Neighboring gene Ras association domain family member 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038904.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC084859, AK001432, BQ772479, BQ929741
      Related
      ENST00000504230.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      12979534..12989548 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      13072068..13082085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)