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    PCBP1-AS1 PCBP1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 400960, updated on 22-Oct-2024

    Summary

    Official Symbol
    PCBP1-AS1provided by HGNC
    Official Full Name
    PCBP1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:42948
    See related
    Ensembl:ENSG00000293616 AllianceGenome:HGNC:42948
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Linc-GALH
    Expression
    Ubiquitous expression in testis (RPKM 3.5), ovary (RPKM 2.9) and 24 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PCBP1-AS1 in Genome Data Viewer
    Location:
    2p13.3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (69962263..70088208, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (69973985..70099932, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (70189395..70315340, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11602 Neighboring gene Sharpr-MPRA regulatory region 10436 Neighboring gene MAX dimerization protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70164441-70164976 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:70173615-70174814 Neighboring gene aspartic peptidase retroviral like 1 Neighboring gene small nucleolar RNA U13 Neighboring gene Sharpr-MPRA regulatory region 1834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70199285-70200162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70202867-70203378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70203379-70203889 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70211622-70212122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70212123-70212623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:70220299-70220798 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:70224580-70224834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15983 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:70256223-70257094 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15984 Neighboring gene Sharpr-MPRA regulatory region 12254 Neighboring gene RNA, 7SL, cytoplasmic 470, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15987 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15988 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11604 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:70315031-70315675 Neighboring gene conserved acetylation island sequence C15 enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11605 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11606 Neighboring gene uncharacterized LOC124906022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15990 Neighboring gene poly(rC) binding protein 1 Neighboring gene mitochondrial ribosomal protein L36 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog

    General gene information

    Markers

    Potential readthrough

    Included gene: ASPRV1

    Other Names

    • Gankyrin Associated LincRNA in Hepatocellular carcinoma
    • PCBP1 antisense RNA 1 (non-protein coding)

    Clone Names

    • AC136007.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033872.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK308634, BC040598
      Related
      ENST00000435880.6
    2. NR_183088.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    3. NR_183089.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    4. NR_183090.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000684907.1
    5. NR_183091.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    6. NR_183092.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000653064.1
    7. NR_183093.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000657575.2
    8. NR_183094.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000702284.1
    9. NR_183095.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000659941.2
    10. NR_183096.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000661703.1
    11. NR_183097.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    12. NR_183098.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    13. NR_183099.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000669583.1
    14. NR_183100.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000668711.1
    15. NR_183101.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000654336.1
    16. NR_183102.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    17. NR_183103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    18. NR_183104.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    19. NR_183105.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    20. NR_183106.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000653606.1
    21. NR_183107.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    22. NR_183108.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    23. NR_183109.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000653596.1
    24. NR_183110.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    25. NR_183111.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    26. NR_183112.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    27. NR_183113.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    28. NR_183114.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    29. NR_183115.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000666167.1
    30. NR_183116.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    31. NR_183117.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    32. NR_183118.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    33. NR_183119.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    34. NR_183120.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    35. NR_183121.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000655420.1
    36. NR_183122.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000666074.1
    37. NR_183123.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    38. NR_183124.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    39. NR_183125.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000655481.1
    40. NR_183126.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000702210.1
    41. NR_183127.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    42. NR_183129.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000416068.6
    43. NR_183130.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    44. NR_183131.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000612202.5
    45. NR_183132.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    46. NR_183133.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    47. NR_183134.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    48. NR_183135.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    49. NR_183136.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    50. NR_183137.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    51. NR_183138.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    52. NR_183139.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    53. NR_183140.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    54. NR_183141.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    55. NR_183142.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    56. NR_183143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    57. NR_183144.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    58. NR_183145.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    59. NR_183146.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    60. NR_183147.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    61. NR_183148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    62. NR_183150.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000654716.1
    63. NR_183151.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    64. NR_183152.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    65. NR_183153.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000664754.1
    66. NR_183154.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    67. NR_183155.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    68. NR_183156.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    69. NR_183157.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    70. NR_183158.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    71. NR_183159.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
      Related
      ENST00000437019.2
    72. NR_183161.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    73. NR_183162.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    74. NR_183163.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    75. NR_183164.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    76. NR_183165.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    77. NR_183166.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    78. NR_183167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    79. NR_183168.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    80. NR_183169.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    81. NR_183170.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    82. NR_183172.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811
    83. NR_183173.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016700, AC079811

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      69962263..70088208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      69973985..70099932 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)