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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001270528.2 → NP_001257457.1 E3 ubiquitin-protein ligase Arkadia isoform 1
See identical proteins and their annotated locations for NP_001257457.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AC025918, AI189975, AL157474, AL832089, BM986870, BX538130, BX647259, CN420669, N24855
- Consensus CDS
-
CCDS58365.1
- Related
- ENSP00000453872.1, ENST00000559209.5
- Conserved Domains (3) summary
-
- pfam05647
Location:407 → 474
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:943 → 984
- zf-RING_2; Ring finger domain
- pfam15303
Location:18 → 251
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
-
NM_001270529.2 → NP_001257458.1 E3 ubiquitin-protein ligase Arkadia isoform 3
See identical proteins and their annotated locations for NP_001257458.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame segment in the 3' coding region, compared to variant 1, which results in a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AC025918, AI189975, AL157474, BC060862, BM986870, BX538130, BX647259, CN420669, N24855
- Conserved Domains (3) summary
-
- pfam05647
Location:407 → 474
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:933 → 974
- zf-RING_2; Ring finger domain
- pfam15303
Location:18 → 251
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
-
NM_001270530.2 → NP_001257459.1 E3 ubiquitin-protein ligase Arkadia isoform 4
See identical proteins and their annotated locations for NP_001257459.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) has multiple differences in the 3' coding region, compared to variant 1, which results in a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AC025918, AI189975, AL832089, BC020984, BM986870, BX538130, BX647259, CN420669, DA720863, N24855
- Consensus CDS
-
CCDS58366.1
- UniProtKB/Swiss-Prot
- C9JUS4, H0YN55, Q6P9A4, Q6ZMU2, Q6ZNA4, Q7L428, Q7Z346, Q8N1P9, Q8WUA3, Q9NSR1
- Related
- ENSP00000452732.1, ENST00000557998.5
- Conserved Domains (3) summary
-
- pfam05647
Location:407 → 474
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:942 → 983
- zf-RING_2; Ring finger domain
- pfam15303
Location:18 → 251
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
-
NM_001330331.2 → NP_001317260.1 E3 ubiquitin-protein ligase Arkadia isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (5) is longer than isoform 1.
- Source sequence(s)
-
AC025918, AC092757, AI189975
- Consensus CDS
-
CCDS81888.1
- Related
- ENSP00000453015.1, ENST00000561186.5
- Conserved Domains (3) summary
-
- pfam05647
Location:407 → 474
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:951 → 992
- zf-RING_2; Ring finger domain
- pfam15303
Location:18 → 251
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
-
NM_017610.8 → NP_060080.6 E3 ubiquitin-protein ligase Arkadia isoform 2
See identical proteins and their annotated locations for NP_060080.6
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame segment in the 3' coding region, compared to variant 1, which results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AC025918, AI189975, AL157474, AL832089, BM986870, BX538130, BX647259, CN420669, N24855
- Consensus CDS
-
CCDS10169.1
- Related
- ENSP00000288199.5, ENST00000348370.9
- Conserved Domains (3) summary
-
- pfam05647
Location:407 → 474
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:934 → 975
- zf-RING_2; Ring finger domain
- pfam15303
Location:18 → 251
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
58987663..59097419
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047432702.1 → XP_047288658.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_047432708.1 → XP_047288664.1 E3 ubiquitin-protein ligase Arkadia isoform X4
-
XM_047432713.1 → XP_047288669.1 E3 ubiquitin-protein ligase Arkadia isoform X9
-
XM_047432717.1 → XP_047288673.1 E3 ubiquitin-protein ligase Arkadia isoform X12
-
XM_047432721.1 → XP_047288677.1 E3 ubiquitin-protein ligase Arkadia isoform X15
-
XM_047432720.1 → XP_047288676.1 E3 ubiquitin-protein ligase Arkadia isoform X14
-
XM_047432723.1 → XP_047288679.1 E3 ubiquitin-protein ligase Arkadia isoform X16
-
XM_047432701.1 → XP_047288657.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_047432706.1 → XP_047288662.1 E3 ubiquitin-protein ligase Arkadia isoform X3
-
XM_047432707.1 → XP_047288663.1 E3 ubiquitin-protein ligase Arkadia isoform X4
-
XM_047432711.1 → XP_047288667.1 E3 ubiquitin-protein ligase Arkadia isoform X7
-
XM_047432705.1 → XP_047288661.1 E3 ubiquitin-protein ligase Arkadia isoform X2
-
XM_047432709.1 → XP_047288665.1 E3 ubiquitin-protein ligase Arkadia isoform X5
-
XM_047432710.1 → XP_047288666.1 E3 ubiquitin-protein ligase Arkadia isoform X6
-
XM_047432712.1 → XP_047288668.1 E3 ubiquitin-protein ligase Arkadia isoform X8
-
XM_006720575.4 → XP_006720638.1 E3 ubiquitin-protein ligase Arkadia isoform X9
- Conserved Domains (3) summary
-
- pfam05647
Location:430 → 494
- Epiglycanin_TR; Tandem-repeating region of mucin, epiglycanin-like
- pfam13639
Location:974 → 1015
- zf-RING_2; Ring finger domain
- pfam15303
Location:41 → 274
- RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
-
XM_047432715.1 → XP_047288671.1 E3 ubiquitin-protein ligase Arkadia isoform X11
-
XM_047432716.1 → XP_047288672.1 E3 ubiquitin-protein ligase Arkadia isoform X12
-
XM_017022336.2 → XP_016877825.1 E3 ubiquitin-protein ligase Arkadia isoform X15
- Conserved Domains (2) summary
-
- pfam06933
Location:429 → 490
- SSP160; Special lobe-specific silk protein SSP160
- cd16474
Location:956 → 1000
- RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
-
XM_047432714.1 → XP_047288670.1 E3 ubiquitin-protein ligase Arkadia isoform X10
-
XM_047432718.1 → XP_047288674.1 E3 ubiquitin-protein ligase Arkadia isoform X13
-
XM_047432719.1 → XP_047288675.1 E3 ubiquitin-protein ligase Arkadia isoform X14
-
XM_047432722.1 → XP_047288678.1 E3 ubiquitin-protein ligase Arkadia isoform X16
-
XM_047432703.1 → XP_047288659.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_047432704.1 → XP_047288660.1 E3 ubiquitin-protein ligase Arkadia isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
56789754..56899501
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054378242.1 → XP_054234217.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_054378248.1 → XP_054234223.1 E3 ubiquitin-protein ligase Arkadia isoform X4
-
XM_054378254.1 → XP_054234229.1 E3 ubiquitin-protein ligase Arkadia isoform X9
-
XM_054378258.1 → XP_054234233.1 E3 ubiquitin-protein ligase Arkadia isoform X12
-
XM_054378263.1 → XP_054234238.1 E3 ubiquitin-protein ligase Arkadia isoform X15
-
XM_054378261.1 → XP_054234236.1 E3 ubiquitin-protein ligase Arkadia isoform X14
-
XM_054378265.1 → XP_054234240.1 E3 ubiquitin-protein ligase Arkadia isoform X16
-
XM_054378241.1 → XP_054234216.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_054378246.1 → XP_054234221.1 E3 ubiquitin-protein ligase Arkadia isoform X3
-
XM_054378247.1 → XP_054234222.1 E3 ubiquitin-protein ligase Arkadia isoform X4
-
XM_054378251.1 → XP_054234226.1 E3 ubiquitin-protein ligase Arkadia isoform X7
-
XM_054378245.1 → XP_054234220.1 E3 ubiquitin-protein ligase Arkadia isoform X2
-
XM_054378249.1 → XP_054234224.1 E3 ubiquitin-protein ligase Arkadia isoform X5
-
XM_054378250.1 → XP_054234225.1 E3 ubiquitin-protein ligase Arkadia isoform X6
-
XM_054378252.1 → XP_054234227.1 E3 ubiquitin-protein ligase Arkadia isoform X8
-
XM_054378253.1 → XP_054234228.1 E3 ubiquitin-protein ligase Arkadia isoform X9
-
XM_054378256.1 → XP_054234231.1 E3 ubiquitin-protein ligase Arkadia isoform X11
-
XM_054378257.1 → XP_054234232.1 E3 ubiquitin-protein ligase Arkadia isoform X12
-
XM_054378262.1 → XP_054234237.1 E3 ubiquitin-protein ligase Arkadia isoform X15
-
XM_054378255.1 → XP_054234230.1 E3 ubiquitin-protein ligase Arkadia isoform X10
-
XM_054378259.1 → XP_054234234.1 E3 ubiquitin-protein ligase Arkadia isoform X13
-
XM_054378260.1 → XP_054234235.1 E3 ubiquitin-protein ligase Arkadia isoform X14
-
XM_054378264.1 → XP_054234239.1 E3 ubiquitin-protein ligase Arkadia isoform X16
-
XM_054378243.1 → XP_054234218.1 E3 ubiquitin-protein ligase Arkadia isoform X1
-
XM_054378244.1 → XP_054234219.1 E3 ubiquitin-protein ligase Arkadia isoform X1