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    CLLU1-AS1 CLLU1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 574016, updated on 27-Aug-2024

    Summary

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    Official Symbol
    CLLU1-AS1provided by HGNC
    Official Full Name
    CLLU1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:24070
    See related
    Ensembl:ENSG00000205057 MIM:616989; AllianceGenome:HGNC:24070
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CLLU1OS
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    Location:
    12q22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92420086..92432999, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92397564..92410484, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (92813862..92826775, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2391 Neighboring gene uncharacterized LOC105369902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6731 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2878 Neighboring gene uncharacterized LOC107984467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6732 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2880 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6735 Neighboring gene chronic lymphocytic leukemia up-regulated 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6740 Neighboring gene Sharpr-MPRA regulatory region 8533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6743 Neighboring gene long intergenic non-protein coding RNA 2397 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6747 Neighboring gene uncharacterized LOC105369904

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of a gene on chromosome 12q22 uniquely overexpressed in chronic lymphocytic leukemia. Buhl AM, et al. Blood, 2006 Apr 1. PMID 16339396
    2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Other Names

    • chronic lymphocytic leukemia up-regulated 1 opposite strand
    • chronic lymphocytic leukemia up-regulated 1 overlapping strand
    • putative chronic lymphocytic leukemia up-regulated protein 1 opposite strand transcript protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144319.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC063949

    2. NR_164161.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC063949
      Related
      ENST00000646751.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      92420086..92432999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      92397564..92410484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025232.1: Suppressed sequence

      Description
      NM_001025232.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5K130.1 GenPept UniProtKB/Swiss-Prot:Q5K130

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials