C18h18orf21 similar to human chromosome 18 open reading frame 21 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: C18h18orf21provided by RGD
Official Full Name: similar to human chromosome 18 open reading frame 21provided by RGD
Primary source: RGD:1564673
See related: EnsemblRapid:ENSRNOG00000015546 AllianceGenome:RGD:1564673
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human C18orf21 (chromosome 18 open reading frame 21). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 56.9), Thymus (RPKM 55.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 18p12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	18	NC_086036.1 (16054038..16062645)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	18	NC_051353.1 (15779349..15786772)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	18	NC_005117.4 (16438091..16445514)

Chromosome 18 - NC_086036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

RH132116 (e-PCR)
- UniSTS:215399

RH130088 (e-PCR)
- UniSTS:213376

BF389632 (e-PCR)
- UniSTS:245499

General protein information

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Preferred Names: UPF0711 protein C18orf21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.