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    LINC00504 long intergenic non-protein coding RNA 504 [ Homo sapiens (human) ]

    Gene ID: 201853, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00504provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 504provided by HGNC
    Primary source
    HGNC:HGNC:43555
    See related
    Ensembl:ENSG00000248360 AllianceGenome:HGNC:43555
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00504 in Genome Data Viewer
    Location:
    4p15.33
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (14470465..14888169, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (14450240..14868074, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (14472089..14889793, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21329 Neighboring gene uncharacterized LOC124900670 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14171749-14172320 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:14173379-14174044 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14174045-14174710 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:14177103-14177745 Neighboring gene Sharpr-MPRA regulatory region 1402 Neighboring gene Sharpr-MPRA regulatory region 15154 Neighboring gene Kruppel like factor 17 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14228109-14228913 Neighboring gene VISTA enhancer hs842 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14337797-14338996 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14366397-14366955 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14404596-14405242 Neighboring gene NANOG hESC enhancer GRCh37_chr4:14412074-14412623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14479536-14480036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14480037-14480537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14482730-14483287 Neighboring gene uncharacterized LOC105374496 Neighboring gene MT-ND2 pseudogene 31 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14667012-14667571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21331 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14857565-14858764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21334 Neighboring gene uncharacterized LOC105374498 Neighboring gene CPEB2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15294 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:15005985-15006551 Neighboring gene C1QTNF7 antisense RNA 1 Neighboring gene cytoplasmic polyadenylation element binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126435.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093777, AC093846, AC134620
      Related
      ENST00000505089.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      14470465..14888169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      14450240..14868074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)