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    RARA-AS1 RARA antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101929693, updated on 17-Sep-2024

    Summary

    Official Symbol
    RARA-AS1provided by HGNC
    Official Full Name
    RARA antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:49577
    See related
    Ensembl:ENSG00000265666 AllianceGenome:HGNC:49577
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in small intestine (RPKM 2.1), colon (RPKM 1.9) and 25 other tissues See more
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    Genomic context

    See RARA-AS1 in Genome Data Viewer
    Location:
    17q21.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (40340867..40343136, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (41204379..41206648, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (38497119..38499388, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:38443891-38444698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:38447656-38448242 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:38452145-38452660 Neighboring gene cell division cycle 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38464859-38465744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38465745-38466628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38468218-38468718 Neighboring gene uncharacterized LOC105371934 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:38473742-38473951 Neighboring gene retinoic acid receptor alpha Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8484 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12140 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38477303-38477887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12142 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:38497666-38498244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38498280-38498830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38498831-38499380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38500481-38501031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38501032-38501581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38501582-38502132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:38509021-38509532 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8487 Neighboring gene Sharpr-MPRA regulatory region 13940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8490 Neighboring gene GJD3 antisense RNA 1 Neighboring gene gap junction protein delta 3 Neighboring gene peptidylprolyl isomerase A pseudogene 54

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110861.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC080112
      Related
      ENST00000581080.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      40340867..40343136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      41204379..41206648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)