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    LINC02582 long intergenic non-protein coding RNA 2582 [ Homo sapiens (human) ]

    Gene ID: 100505817, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02582provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2582provided by HGNC
    Primary source
    HGNC:HGNC:53792
    See related
    Ensembl:ENSG00000261780 AllianceGenome:HGNC:53792
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02582 in Genome Data Viewer
    Location:
    18q22.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (73324941..73349889)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (73546397..73571351)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (70992176..71017124)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene NETO1 divergent transcript Neighboring gene ReSE screen-validated silencer GRCh37_chr18:70761987-70762155 Neighboring gene long intergenic non-protein coding RNA 2864 Neighboring gene Sharpr-MPRA regulatory region 3365 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:70912438-70913029 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:70916635-70917834 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:70926050-70926267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:70931223-70931724 Neighboring gene chr18 t(4;18)(q35;q18) HERV-H recombination region Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49950 Neighboring gene uncharacterized LOC105372190 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49980 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:71098754-71099424 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_49987 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50021 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:71230790-71231989 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:71358526-71359026 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:71359027-71359527 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:71362654-71363853 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:71382077-71383276 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:71384186-71385385 Neighboring gene RNA, 7SL, cytoplasmic 401, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038340.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC105243, AI656044, BC071801
      Related
      ENST00000563172.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      73324941..73349889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      73546397..73571351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)