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    LINC02092 long intergenic non-protein coding RNA 2092 [ Homo sapiens (human) ]

    Gene ID: 400620, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02092provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2092provided by HGNC
    Primary source
    HGNC:HGNC:52943
    See related
    Ensembl:ENSG00000234721 AllianceGenome:HGNC:52943
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02092 in Genome Data Viewer
    Location:
    17q25.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (73786822..73800795)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (74677609..74691579)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (71782961..71796934)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904054 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71649316-71649844 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71682138-71682716 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71731954-71732466 Neighboring gene uncharacterized LOC100134391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71763520-71764020 Neighboring gene long intergenic non-protein coding RNA 469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766371-71766872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766873-71767372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71793394-71793894 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71816259-71816880 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:71817072-71817648 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71824013-71824522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71825513-71826014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71826015-71826514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71839003-71839503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71853558-71854172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71854173-71854786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71873696-71874196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71874197-71874697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71902449-71902950 Neighboring gene MPRA-validated peak2991 silencer Neighboring gene uncharacterized LOC107985081 Neighboring gene uncharacterized LOC105371888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71969789-71970488 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71970489-71971186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71983339-71984178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72001833-72002829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72005404-72005904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72037304-72037804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076161-72076662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:72076663-72077162 Neighboring gene long intergenic non-protein coding RNA 2074

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040020.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC125421, BC035399
      Related
      ENST00000455366.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      73786822..73800795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      74677609..74691579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)