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    LINC01152 long intergenic non-protein coding RNA 1152 [ Homo sapiens (human) ]

    Gene ID: 102606463, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01152provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1152provided by HGNC
    Primary source
    HGNC:HGNC:16752
    See related
    Ensembl:ENSG00000256124 AllianceGenome:HGNC:16752
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CMPD; TCONS_00025128
    Expression
    Biased expression in salivary gland (RPKM 1.5), testis (RPKM 0.9) and 5 other tissues See more
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    Genomic context

    See LINC01152 in Genome Data Viewer
    Location:
    17q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (72030654..72041297)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (72903841..72914495)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (70026795..70037438)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985015 Neighboring gene SOX9 enhancer E3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:69867322-69868521 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:69896473-69897672 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8909 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12667 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:70025920-70026690 Neighboring gene uncharacterized LOC102723517 Neighboring gene regulator of chondrogenesis RNA Neighboring gene long intergenic non-protein coding RNA 2097 Neighboring gene SOX9 antisense RNA 1 Neighboring gene SOX9 enhancer E1 Neighboring gene SOX9 enhancer eALDI Neighboring gene TES enhancer upstream of SOX9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:70113837-70114458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:70115824-70116324 Neighboring gene SOX9 promoter region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:70119336-70119859 Neighboring gene SRY-box transcription factor 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110124.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC007461
      Related
      ENST00000472655.4
    2. NR_110132.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC007461, DA197482

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      72030654..72041297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      72903841..72914495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)