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    KIRREL3-AS2 KIRREL3 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 100874251, updated on 22-Oct-2024

    Summary

    Official Symbol
    KIRREL3-AS2provided by HGNC
    Official Full Name
    KIRREL3 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:42656
    See related
    Ensembl:ENSG00000254960 AllianceGenome:HGNC:42656
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.1) See more
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    Genomic context

    See KIRREL3-AS2 in Genome Data Viewer
    Location:
    11q24.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (126940746..126945090)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (126973922..126978265)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (126810642..126814986)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene uncharacterized LOC105369561 Neighboring gene NANOG hESC enhancer GRCh37_chr11:126601470-126602005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126693299-126693800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126693801-126694300 Neighboring gene uncharacterized LOC105369559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5712 Neighboring gene NANOG hESC enhancer GRCh37_chr11:126838861-126839394 Neighboring gene uncharacterized LOC105369558 Neighboring gene microRNA 3167

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study identifies protein quantitative trait loci (pQTLs).
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046986.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW303325, BC031955
      Related
      ENST00000532988.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      126940746..126945090
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      126973922..126978265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)