NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008197.2 RefSeqGene
- Range
-
218106..393135
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_000381.4 → NP_000372.1 E3 ubiquitin-protein ligase Midline-1 isoform 1
See identical proteins and their annotated locations for NP_000372.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as alpha) is the longest transcript. Variants 1-4 and variant 10 encode the same isoform (1).
- Source sequence(s)
-
BC053626, DC309977, EF217426
- Consensus CDS
-
CCDS14138.1
- UniProtKB/Swiss-Prot
- B2RCG2, O15344, O75361, Q9BZX5
- UniProtKB/TrEMBL
-
A8K5A0
- Related
- ENSP00000312678.4, ENST00000317552.9
- Conserved Domains (7) summary
-
- smart00502
Location:219 → 344
- BBC; B-Box C-terminal domain
- cd00063
Location:381 → 481
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:485 → 661
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19822
Location:168 → 214
- Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:323 → 374
- COS; TRIM C-terminal subgroup One Signature domain
-
NM_001098624.2 → NP_001092094.1 E3 ubiquitin-protein ligase Midline-1 isoform 1
See identical proteins and their annotated locations for NP_001092094.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) has an alternate 5' UTR exon, as compared to variant 1. Variants 1-4 and variant 10 encode the same isoform (1).
- Source sequence(s)
-
BC053626, DC369426, EF217426
- Consensus CDS
-
CCDS14138.1
- UniProtKB/Swiss-Prot
- B2RCG2, O15344, O75361, Q9BZX5
- UniProtKB/TrEMBL
-
A8K5A0
- Related
- ENSP00000414521.2, ENST00000453318.6
- Conserved Domains (7) summary
-
- smart00502
Location:219 → 344
- BBC; B-Box C-terminal domain
- cd00063
Location:381 → 481
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:485 → 661
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19822
Location:168 → 214
- Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:323 → 374
- COS; TRIM C-terminal subgroup One Signature domain
-
NM_001193277.1 → NP_001180206.1 E3 ubiquitin-protein ligase Midline-1 isoform 1
See identical proteins and their annotated locations for NP_001180206.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an alternate 5' UTR exon, as compared to variant 1. Variants 1-4 and variant 10 encode the same isoform (1).
- Source sequence(s)
-
AF035360, DA435613, EF217426
- Consensus CDS
-
CCDS14138.1
- UniProtKB/Swiss-Prot
- B2RCG2, O15344, O75361, Q9BZX5
- UniProtKB/TrEMBL
-
A8K5A0
- Related
- ENSP00000370156.1, ENST00000380779.5
- Conserved Domains (7) summary
-
- smart00502
Location:219 → 344
- BBC; B-Box C-terminal domain
- cd00063
Location:381 → 481
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:485 → 661
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19822
Location:168 → 214
- Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:323 → 374
- COS; TRIM C-terminal subgroup One Signature domain
-
NM_001193278.1 → NP_001180207.1 E3 ubiquitin-protein ligase Midline-1 isoform 3
See identical proteins and their annotated locations for NP_001180207.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) has an additional in-frame exon in the CDS and also lacks several 3' exons but has an alternate 3' segment, as compared to variant 1. The resulting isoform (3) has an additional segment in the middle region and has a shorter and different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AF035360, AI371111, AY539994
- Consensus CDS
-
CCDS75952.1
- UniProtKB/TrEMBL
-
A0A087X255
- Related
- ENSP00000484712.1, ENST00000616003.5
- Conserved Domains (3) summary
-
- smart00336
Location:171 → 212
- BBOX; B-Box-type zinc finger
- cd00162
Location:9 → 63
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl23765
Location:303 → 395
- iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
-
NM_001193279.1 → NP_001180208.1 E3 ubiquitin-protein ligase Midline-1 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks several 3' exons but has an alternate 3' segment, as compared to variant 1. The resulting isoform (4) has a shorter and different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AF035360, AI371111, AY540022
- Consensus CDS
-
CCDS94548.1
- UniProtKB/TrEMBL
- A0A8I5KPE0, C9J453
- Related
- ENSP00000508734.1, ENST00000687008.1
- Conserved Domains (3) summary
-
- smart00336
Location:171 → 212
- BBOX; B-Box-type zinc finger
- cd00162
Location:9 → 63
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl23765
Location:219 → 344
- iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
-
NM_001193280.1 → NP_001180209.1 E3 ubiquitin-protein ligase Midline-1 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) has an alternate splice site in the CDS and also lacks several 3' exons but has an alternate 3' segment, as compared to variant 1. The resulting isoform (5) lacks an internal segment in the N-terminal region and has a shorter and different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AF035360, AI371111, AY540023
- UniProtKB/TrEMBL
-
B7Z5K6
- Conserved Domains (3) summary
-
- smart00336
Location:114 → 152
- BBOX; B-Box-type zinc finger
- cd00162
Location:9 → 63
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl23765
Location:182 → 306
- iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
-
NM_001347733.2 → NP_001334662.1 E3 ubiquitin-protein ligase Midline-1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) has an alternate 5' UTR exon, as compared to variant 1. Variants 1-4 and variant 10 encode the same isoform (1). This variant represents use of an alternate long terminal repeat (LTR) promoter and exon sequence, and results in placenta expression. (PMID: 12411602)
- Source sequence(s)
-
AC008008, AC117406
- Consensus CDS
-
CCDS14138.1
- UniProtKB/Swiss-Prot
- B2RCG2, O15344, O75361, Q9BZX5
- UniProtKB/TrEMBL
-
A8K5A0
- Related
- ENSP00000370157.1, ENST00000380780.5
- Conserved Domains (7) summary
-
- smart00502
Location:219 → 344
- BBC; B-Box C-terminal domain
- cd00063
Location:381 → 481
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:485 → 661
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19822
Location:168 → 214
- Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:323 → 374
- COS; TRIM C-terminal subgroup One Signature domain
-
NM_033289.2 → NP_150631.1 E3 ubiquitin-protein ligase Midline-1 isoform 2
See identical proteins and their annotated locations for NP_150631.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has an alternate splice site in the CDS, as compared to variant 1. The resulting isoform (2) lacks an internal segment in the N-terminal region, as compared to the isoform 1.
- Source sequence(s)
-
AK226104, DC309977, EF217426
- Consensus CDS
-
CCDS94549.1
- UniProtKB/TrEMBL
- A0A8I5KR14, B4DLX8
- Related
- ENSP00000509730.1, ENST00000690004.1
- Conserved Domains (6) summary
-
- smart00502
Location:182 → 306
- BBC; B-Box C-terminal domain
- cd00063
Location:343 → 443
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:447 → 623
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:285 → 336
- COS; TRIM C-terminal subgroup One Signature domain
-
NM_033290.4 → NP_150632.1 E3 ubiquitin-protein ligase Midline-1 isoform 1
See identical proteins and their annotated locations for NP_150632.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has an alternate 5' UTR exon, as compared to variant 1. Variants 1-4 and variant 10 encode the same isoform (1). Expression was found to be adipose specific.
- Source sequence(s)
-
AF041210, DA856308, EF217426
- Consensus CDS
-
CCDS14138.1
- UniProtKB/Swiss-Prot
- B2RCG2, O15344, O75361, Q9BZX5
- UniProtKB/TrEMBL
-
A8K5A0
- Related
- ENSP00000370164.1, ENST00000380787.5
- Conserved Domains (7) summary
-
- smart00502
Location:219 → 344
- BBC; B-Box C-terminal domain
- cd00063
Location:381 → 481
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd12892
Location:485 → 661
- SPRY_PRY_TRIM18; PRY/SPRY domain of TRIM18/MID1, also known as FXY or RNF59
- cd16753
Location:8 → 61
- RING-HC_MID1; RING finger, HC subclass, found in midline-1 (MID1) and similar proteins
- cd19822
Location:168 → 214
- Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
- cd19836
Location:115 → 164
- Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
- pfam18568
Location:323 → 374
- COS; TRIM C-terminal subgroup One Signature domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
10445310..10833683 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
10027869..10416213 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001193281.1: Suppressed sequence
- Description
- NM_001193281.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
-
NM_033291.1: Suppressed sequence
- Description
- NM_033291.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.