U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BTF3L4 basic transcription factor 3 like 4 [ Homo sapiens (human) ]

    Gene ID: 91408, updated on 17-Sep-2024

    Summary

    Official Symbol
    BTF3L4provided by HGNC
    Official Full Name
    basic transcription factor 3 like 4provided by HGNC
    Primary source
    HGNC:HGNC:30547
    See related
    Ensembl:ENSG00000134717 AllianceGenome:HGNC:30547
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in thyroid (RPKM 12.4), adrenal (RPKM 12.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See BTF3L4 in Genome Data Viewer
    Location:
    1p32.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (52056295..52090716)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (51937800..51972197)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (52521967..52556388)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1030 Neighboring gene thioredoxin domain containing 12 Neighboring gene TXNDC12 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:52520887-52521291 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:52521457-52522170 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:52522171-52522882 Neighboring gene KTI12 chromatin associated homolog Neighboring gene collagen alpha-2(I) chain-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 885 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:52613533-52614066 Neighboring gene alcohol dehydrogenase 5 (class III), chi polypeptide pseudogene Neighboring gene RNA, 7SL, cytoplasmic 788, pseudogene Neighboring gene zinc finger FYVE-type containing 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    transcription factor BTF3 homolog 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001136497.3NP_001129969.1  transcription factor BTF3 homolog 4 isoform 2

      See identical proteins and their annotated locations for NP_001129969.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks the exon containing the translation start codon compared to variant (1). The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AK027582, AL139156, BU567198
      Consensus CDS
      CCDS44146.1
      UniProtKB/Swiss-Prot
      Q96K17
      Related
      ENSP00000436712.1, ENST00000472944.6
      Conserved Domains (1) summary
      cd22055
      Location:162
      NAC_BTF3; basal transcription factor BTF3
    2. NM_001243767.2NP_001230696.1  transcription factor BTF3 homolog 4 isoform 3

      See identical proteins and their annotated locations for NP_001230696.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon in the coding region, which results in a frameshift, compared to variant 1. The encoded isoform (3) is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AL139156, DA369498
      Consensus CDS
      CCDS58001.1
      UniProtKB/Swiss-Prot
      Q96K17
      Related
      ENSP00000434824.1, ENST00000489308.6
    3. NM_152265.5NP_689478.1  transcription factor BTF3 homolog 4 isoform 1

      See identical proteins and their annotated locations for NP_689478.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AL139156, BC070378
      Consensus CDS
      CCDS30713.1
      UniProtKB/Swiss-Prot
      B3KNJ1, D3DQ32, G3V1C6, Q96K17
      UniProtKB/TrEMBL
      E9PL10
      Related
      ENSP00000360664.4, ENST00000313334.13
      Conserved Domains (1) summary
      cd22055
      Location:4120
      NAC_BTF3; basal transcription factor BTF3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      52056295..52090716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      51937800..51972197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)