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    LOC100271832 uncharacterized LOC100271832 [ Homo sapiens (human) ]

    Gene ID: 100271832, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC100271832
    Gene description
    uncharacterized LOC100271832
    See related
    Ensembl:ENSG00000236854
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100271832 in Genome Data Viewer
    Location:
    2p22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (32927087..32946136)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (32972844..32991863)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (33152154..33171203)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 486 Neighboring gene Sharpr-MPRA regulatory region 6729 Neighboring gene uncharacterized LOC105374453 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:33111152-33111352 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11345 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11346 Neighboring gene latent transforming growth factor beta binding protein 1 Neighboring gene Sharpr-MPRA regulatory region 2981 Neighboring gene NANOG hESC enhancer GRCh37_chr2:33281163-33281664 Neighboring gene Sharpr-MPRA regulatory region 6273 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:33294707-33295906 Neighboring gene H2AC histone family pseudogene 2 Neighboring gene tRNA-yW synthesizing protein 1 homolog pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • AL121656.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027097.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244, BC035107
      Related
      ENST00000659655.2

    2. NR_183185.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244
      Related
      ENST00000654895.2

    3. NR_183186.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244
      Related
      ENST00000666151.2

    4. NR_183187.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244

    5. NR_183188.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244
      Related
      ENST00000663506.1

    6. NR_183189.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121656, AL133244
      Related
      ENST00000660594.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      32927087..32946136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      32972844..32991863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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