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    PROSER2-AS1 PROSER2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 219731, updated on 17-Jun-2024

    Summary

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    Official Symbol
    PROSER2-AS1provided by HGNC
    Official Full Name
    PROSER2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27343
    See related
    Ensembl:ENSG00000225778 AllianceGenome:HGNC:27343
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in placenta (RPKM 2.5), testis (RPKM 2.2) and 4 other tissues See more
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    Genomic context

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    See PROSER2-AS1 in Genome Data Viewer
    Location:
    10p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (11849608..11894710, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (11861043..11906028, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (11891607..11936709, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379850 Neighboring gene uncharacterized LOC105376415 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:11835512-11836711 Neighboring gene proline and serine rich 2 Neighboring gene Sharpr-MPRA regulatory region 652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11917739-11918586 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:11923543-11924742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3027 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:11940130-11941329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3028 Neighboring gene RNA, U6 small nuclear 1095, pseudogene Neighboring gene UPF2 regulator of nonsense mediated mRNA decay Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3029 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2135 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3031 Neighboring gene uncharacterized LOC105376416

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038222.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA609739, AK056703, AL138898, CB960510
      Related
      ENST00000445498.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      11849608..11894710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      11861043..11906028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials