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    LINC00691 long intergenic non-protein coding RNA 691 [ Homo sapiens (human) ]

    Gene ID: 152024, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00691provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 691provided by HGNC
    Primary source
    HGNC:HGNC:44514
    See related
    Ensembl:ENSG00000224074 AllianceGenome:HGNC:44514
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

    See LINC00691 in Genome Data Viewer
    Location:
    3p24.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (24099974..24103247, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (24104473..24107746, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (24141465..24144738, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor interacting Ras like 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:23987327-23987868 Neighboring gene Sharpr-MPRA regulatory region 12700 Neighboring gene MPRA-validated peak4577 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:24023426-24023962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:24023963-24024497 Neighboring gene nuclear receptor subfamily 1 group D member 2 Neighboring gene Sharpr-MPRA regulatory region 5785 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:24136149-24136737 Neighboring gene nucleophosmin 1 pseudogene 23 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:24184437-24185636 Neighboring gene MPRA-validated peak4578 silencer Neighboring gene thyroid hormone receptor beta Neighboring gene THRB antisense RNA 2 Neighboring gene GATA motif-containing MPRA enhancer 252 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:24401392-24402024 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:24437700-24438265 Neighboring gene Sharpr-MPRA regulatory region 12793 Neighboring gene ribosomal protein L31 pseudogene 20

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026834.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC033355, BC039347, BC045572
      Related
      ENST00000432505.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      24099974..24103247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      24104473..24107746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)