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    MIR4290HG MIR4290 host gene [ Homo sapiens (human) ]

    Gene ID: 286370, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MIR4290HGprovided by HGNC
    Official Full Name
    MIR4290 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:27861
    See related
    Ensembl:ENSG00000227555 AllianceGenome:HGNC:27861
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See MIR4290HG in Genome Data Viewer
    Location:
    9q22.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (90020654..90041499, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (102185770..102206617, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (92782936..92803781, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108797 Neighboring gene uncharacterized LOC101927847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28566 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92776129-92777328 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28567 Neighboring gene NANOG hESC enhancer GRCh37_chr9:92796466-92797003 Neighboring gene microRNA 4290 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92822514-92823713 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92824519-92825718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28568 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108944 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28569 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20019 Neighboring gene interleukin 6 receptor pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92912157-92912789 Neighboring gene uncharacterized LOC105376142

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038882.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL161629, BC039331
      Related
      ENST00000426593.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      90020654..90041499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      102185770..102206617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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