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    LOC105374928 uncharacterized LOC105374928 [ Homo sapiens (human) ]

    Gene ID: 105374928, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC105374928
    Gene description
    uncharacterized LOC105374928
    See related
    Ensembl:ENSG00000233656
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

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    See LOC105374928 in Genome Data Viewer
    Location:
    6p24.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (11417363..11524124)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (11285302..11392811)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (11417596..11524357)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene neural precursor cell expressed, developmentally down-regulated 9 Neighboring gene uncharacterized LOC105374925 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:11298822-11299579 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23984 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:11344190-11345389 Neighboring gene Sharpr-MPRA regulatory region 10259 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:11370467-11370968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:11370969-11371468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23985 Neighboring gene uncharacterized LOC105374927 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:11395146-11395358 Neighboring gene uncharacterized LOC105374929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23987 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23989 Neighboring gene RNA, U1 small nuclear 64, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16913 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:11538275-11538776 Neighboring gene THAP domain containing 12 pseudogene 5 Neighboring gene transmembrane protein 170B Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:11609547-11610088 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:11650363-11650968 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:11650969-11651574 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16917 Neighboring gene small nucleolar RNA SNORA67 Neighboring gene uncharacterized LOC340184

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187824.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445430

    2. NR_187825.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445430
      Related
      ENST00000419796.3

    3. NR_187826.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445430
      Related
      ENST00000805890.1

    4. NR_187827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445430
      Related
      ENST00000655515.1

    5. NR_187828.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445430
      Related
      ENST00000667074.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      11417363..11524124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      11285302..11392811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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