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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008835.1 RefSeqGene
- Range
-
4974..424001
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001171930.2 → NP_001165401.1 cadherin-23 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (3) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AF312024, AL359183, AL731541, BC011570, BC065284, BC136976, DB333699
- Consensus CDS
-
CCDS81472.1
- UniProtKB/TrEMBL
- A0A087WYR8, A0A0A0MS94, Q6P152
- Related
- ENSP00000482036.2, ENST00000616684.4
- Conserved Domains (1) summary
-
- cd11304
Location:894 → 990
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001171931.2 → NP_001165402.1 cadherin-23 isoform 4 precursor
See identical proteins and their annotated locations for NP_001165402.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (4) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL359183, AL731541, BC011570, BC032581
- Consensus CDS
-
CCDS81473.1
- UniProtKB/TrEMBL
- B1AVV0, G3XCN8, Q8N5B3
- Related
- ENSP00000299366.8, ENST00000299366.11
- Conserved Domains (1) summary
-
- cd11304
Location:894 → 990
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001171932.2 → NP_001165403.1 cadherin-23 isoform 5 precursor
See identical proteins and their annotated locations for NP_001165403.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (5) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL359183, AL772287, BC011570, BC139903
- UniProtKB/TrEMBL
-
A5D6V9
- Conserved Domains (1) summary
-
- cd11304
Location:136 → 231
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001171933.1 → NP_001165404.1 cadherin-23 isoform 6
See identical proteins and their annotated locations for NP_001165404.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (6, also referred to as isoform B1) is shorter than isoform 1.
- Source sequence(s)
-
AL731541, AY563161, AY563165, BM673126
- Consensus CDS
-
CCDS53540.1
- UniProtKB/Swiss-Prot
-
Q9H251
- Related
- ENSP00000381768.3, ENST00000398788.4
- Conserved Domains (1) summary
-
- cd11304
Location:166 → 264
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001171934.1 → NP_001165405.1 cadherin-23 isoform 7
See identical proteins and their annotated locations for NP_001165405.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. This variant also lacks an in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (7, also referred to as isoform B2) is shorter than isoform 1.
- Source sequence(s)
-
AL731541, AY563161, AY563165, BM673126
- Consensus CDS
-
CCDS73146.1
- UniProtKB/Swiss-Prot
-
Q9H251
- Related
- ENSP00000478374.1, ENST00000619887.4
- Conserved Domains (1) summary
-
- cd11304
Location:166 → 264
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001171935.1 → NP_001165406.1 cadherin-23 isoform 8
See identical proteins and their annotated locations for NP_001165406.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (8, also referred to as isoform C1) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AY563161, BM673126
- UniProtKB/Swiss-Prot
-
Q9H251
-
NM_001171936.1 → NP_001165407.1 cadherin-23 isoform 9
See identical proteins and their annotated locations for NP_001165407.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This variant also lacks an in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (9, also referred to as isoform C2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AY563162, BM673126
- UniProtKB/Swiss-Prot
-
Q9H251
-
NM_022124.6 → NP_071407.4 cadherin-23 isoform 1 precursor
See identical proteins and their annotated locations for NP_071407.4
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AF312024, AL359183, AL731541, AY563161, BC011570, BC065284, BC136976, BM673126
- Consensus CDS
-
CCDS86100.1
- UniProtKB/Swiss-Prot
- C4IXS9, F6U049, Q5QGS1, Q5QGS2, Q5QGS5, Q5QGS6, Q5XKN2, Q6UWW1, Q96JL3, Q9H251, Q9H4K9
- Related
- ENSP00000224721.9, ENST00000224721.12
- Conserved Domains (1) summary
-
- cd11304
Location:1426 → 1523
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_052836.4 → NP_443068.1 cadherin-23 isoform 2 precursor
See identical proteins and their annotated locations for NP_443068.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (2) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL359183, AL772287, AY358617, BC011570, BC136976
- Consensus CDS
-
CCDS44429.1
- UniProtKB/TrEMBL
-
Q32P55
- Related
- ENSP00000473454.2, ENST00000461841.7
- Conserved Domains (1) summary
-
- cd11304
Location:136 → 231
- Cadherin_repeat; Cadherin tandem repeat domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
71396920..71815947
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
72266464..72686680
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)