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    LINC02612 long intergenic non-protein coding RNA 2612 [ Homo sapiens (human) ]

    Gene ID: 101929282, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02612provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2612provided by HGNC
    Primary source
    HGNC:HGNC:54067
    See related
    Ensembl:ENSG00000224048 AllianceGenome:HGNC:54067
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 6.3) See more
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    Genomic context

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    See LINC02612 in Genome Data Viewer
    Location:
    2q23.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (150628897..150635357)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (151080063..151086513)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (151485411..151491871)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16628 Neighboring gene Rho family GTPase 3 Neighboring gene long intergenic non-protein coding RNA 1920 Neighboring gene Sharpr-MPRA regulatory region 14725 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:151476766-151477965 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:151519399-151520598 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:151592090-151593019 Neighboring gene NANOG hESC enhancer GRCh37_chr2:151607046-151607561 Neighboring gene MPRA-validated peak3900 silencer Neighboring gene uncharacterized LOC105373686 Neighboring gene uncharacterized LOC107985826

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC104777.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110244.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC104777
      Related
      ENST00000652947.1

    2. NR_110245.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains multiple differences in the internal exons and the 3' region, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC104777
      Related
      ENST00000423428.2

    3. NR_110246.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon and uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC104777
      Related
      ENST00000797903.1

    4. NR_110247.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an internal exon and uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC104777
      Related
      ENST00000443811.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      150628897..150635357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      151080063..151086513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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