NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_053069.1 RefSeqGene
- Range
-
5043..280303
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001349485.2 → NP_001336414.1 E3 SUMO-protein ligase NSE2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR compared to variant 1. Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
AC084083, AC126366
- Consensus CDS
-
CCDS6356.1
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Related
- ENSP00000430668.1, ENST00000522563.6
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
NM_001349486.2 → NP_001336415.1 E3 SUMO-protein ligase NSE2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate slice site in the 5' UTR compared to variant 1. Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
AC084083, AC126366
- Consensus CDS
-
CCDS6356.1
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
NM_001349487.2 → NP_001336416.1 E3 SUMO-protein ligase NSE2 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks several exons and its 3' terminal exon extends past a splice site that is used in variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC126366, BM993808
- Consensus CDS
-
CCDS87625.1
- UniProtKB/TrEMBL
- A0A087WTZ8, E5RIM1
- Related
- ENSP00000478256.1, ENST00000520866.5
-
NM_173685.4 → NP_775956.1 E3 SUMO-protein ligase NSE2 isoform 1
See identical proteins and their annotated locations for NP_775956.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
BC032797, CB217595
- Consensus CDS
-
CCDS6356.1
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Related
- ENSP00000287437.3, ENST00000287437.8
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
RNA
-
NR_146191.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site and contains an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC084083, AC126366
-
NR_146192.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks several exons, contains an exon, and its 3' terminal exon extends past a splice site that is used in variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC126366, BM993808
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
125091860..125367120
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017013331.2 → XP_016868820.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
XM_047421702.1 → XP_047277658.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_011516974.3 → XP_011515276.1 E3 SUMO-protein ligase NSE2 isoform X2
See identical proteins and their annotated locations for XP_011515276.1
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
XM_047421705.1 → XP_047277661.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_047421703.1 → XP_047277659.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_024447130.2 → XP_024302898.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
XM_011516975.3 → XP_011515277.1 E3 SUMO-protein ligase NSE2 isoform X2
See identical proteins and their annotated locations for XP_011515277.1
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
- Conserved Domains (1) summary
-
- cd16651
Location:167 → 237
- SPL-RING_NSE2; SPL-RING finger found in E3 SUMO-protein ligase NSE2 and similar proteins
-
XM_047421704.1 → XP_047277660.1 E3 SUMO-protein ligase NSE2 isoform X4
- Related
- ENSP00000429612.1, ENST00000517532.5
-
XM_017013332.3 → XP_016868821.1 E3 SUMO-protein ligase NSE2 isoform X3
-
XM_017013330.3 → XP_016868819.1 E3 SUMO-protein ligase NSE2 isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
126225519..126500604
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054360311.1 → XP_054216286.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360308.1 → XP_054216283.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360310.1 → XP_054216285.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360309.1 → XP_054216284.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360306.1 → XP_054216281.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360307.1 → XP_054216282.1 E3 SUMO-protein ligase NSE2 isoform X2
- UniProtKB/Swiss-Prot
- Q8N549, Q96MF7
-
XM_054360313.1 → XP_054216288.1 E3 SUMO-protein ligase NSE2 isoform X4
-
XM_054360312.1 → XP_054216287.1 E3 SUMO-protein ligase NSE2 isoform X3
-
XM_054360305.1 → XP_054216280.1 E3 SUMO-protein ligase NSE2 isoform X1