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    LINC01191 long intergenic non-protein coding RNA 1191 [ Homo sapiens (human) ]

    Gene ID: 440900, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC01191provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1191provided by HGNC
    Primary source
    HGNC:HGNC:49595
    See related
    Ensembl:ENSG00000234199 AllianceGenome:HGNC:49595
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    VIN; lnc-ACTR3
    Expression
    Restricted expression toward testis (RPKM 31.3) See more
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    Genomic context

    See LINC01191 in Genome Data Viewer
    Location:
    2q14.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113969322..114028082)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114393965..114452869)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114726899..114785659)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ACTR3 antisense RNA 1 Neighboring gene uncharacterized LOC124906071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16431 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114647589-114648244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16432 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16433 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11890 Neighboring gene actin related protein 3 Neighboring gene Sharpr-MPRA regulatory region 10480 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11891 Neighboring gene long intergenic non-protein coding RNA 2992 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC124907876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114859097-114859598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114859599-114860098 Neighboring gene NANOG hESC enhancer GRCh37_chr2:115006183-115006724 Neighboring gene selenophosphate synthetase 1 pseudogene 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034128.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010982, AC110769, AW016224
      Related
      ENST00000412690.2
    2. NR_148507.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010982, AC110769
    3. NR_148508.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010982, AC110769
      Related
      ENST00000828064.1
    4. NR_148509.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010982, AC110769
      Related
      ENST00000828060.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      113969322..114028082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      114393965..114452869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)