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    SEC24B-AS1 SEC24B antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100533182, updated on 17-Sep-2024

    Summary

    Official Symbol
    SEC24B-AS1provided by HGNC
    Official Full Name
    SEC24B antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44003
    See related
    Ensembl:ENSG00000247950 AllianceGenome:HGNC:44003
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    1/2-SBSRNA4
    Summary
    This lncRNA contains a single Alu element which, along with 1/2-sbsRNA3, appears to target the 3' UTR Alu element in MTAP. Downregulation of the RNA appears to up-regulate the target. [provided by RefSeq, Feb 2011]
    Expression
    Ubiquitous expression in thyroid (RPKM 1.0), ovary (RPKM 0.6) and 24 other tissues See more
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    Genomic context

    See SEC24B-AS1 in Genome Data Viewer
    Location:
    4q25
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (109429963..109433817, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (112732094..112735948, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (110351119..110354973, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110223886-110224668 Neighboring gene COL25A1 divergent transcript Neighboring gene RBMX pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314172-110314672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314673-110315173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110340209-110340746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:110354865-110355724 Neighboring gene Sharpr-MPRA regulatory region 6018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110374133-110374713 Neighboring gene SEC24 homolog B, COPII coat complex component Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71781 Neighboring gene RNA, 7SL, cytoplasmic 55, pseudogene Neighboring gene microRNA 576

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • SEC24B antisense RNA 1 (non-protein coding)
    • lncRNA_BC009800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039978.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC138782, BC009800
      Related
      ENST00000499359.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      109429963..109433817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      112732094..112735948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)