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    TPH3 Tph3p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853436, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPH3
    Official Full Name
    Tph3p
    Primary source
    SGD:S000003553
    Locus tag
    YJL016W
    See related
    AllianceGenome:SGD:S000003553; FungiDB:YJL016W; VEuPathDB:YJL016W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    YJL017W
    Summary
    Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See TPH3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (405588..407273)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Bbc1p Neighboring gene Mps3p Neighboring gene chaperonin-containing T-complex subunit CCT3 Neighboring gene Mad3p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing and comparison of yeast species to identify genes and regulatory elements. Kellis M, et al. Nature, 2003 May 15. PMID 12748633
    2. Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Brachat S, et al. Genome Biol, 2003. PMID 12844361, Free PMC Article
    3. Using HHsearch to tackle proteins of unknown function: A pilot study with PH domains. Fidler DR, et al. Traffic, 2016 Nov. PMID 27601190, Free PMC Article
    4. The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates. Soulard A, et al. Mol Biol Cell, 2010 Oct 1. PMID 20702584, Free PMC Article
    5. Wss1 metalloprotease partners with Cdc48/Doa1 in processing genotoxic SUMO conjugates. Balakirev MY, et al. Elife, 2015 Sep 8. PMID 26349035, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Tph3p
    NP_012518.2
    • hypothetical protein; GFP-fusion protein localizes to the cytoplasm; contains two adjacent PH-like domains; conserved in closely related Saccharomyces species

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      405588..407273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181450.1 → NP_012518.2  TPA: Tph3p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012518.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VWG2, P47071, P47072, Q86ZR5
      UniProtKB/TrEMBL
      A6ZPV4, C7GSP6, C8ZBJ5, G2WGZ6, N1P8K4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P47072.2

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