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    LINC00907 long intergenic non-protein coding RNA 907 [ Homo sapiens (human) ]

    Gene ID: 284260, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00907provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 907provided by HGNC
    Primary source
    HGNC:HGNC:44327
    See related
    Ensembl:ENSG00000267586 AllianceGenome:HGNC:44327
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00907 in Genome Data Viewer
    Location:
    18q12.3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (42186668..42691426)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (42378345..42883242)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (39766633..40271391)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13248 Neighboring gene phosphatidylinositol 3-kinase catalytic subunit type 3 Neighboring gene uncharacterized LOC124904350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13249 Neighboring gene RNA, 5S ribosomal pseudogene 454 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:39967382-39967559 Neighboring gene Sharpr-MPRA regulatory region 1896 Neighboring gene uncharacterized LOC124904351 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:40321669-40322334 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:40323669-40324335 Neighboring gene Ras like without CAAX 2 Neighboring gene synaptotagmin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. lincRNA00907 promotes NASH progression by targeting miRNA-942-5p/TAOK1. Du G, et al. Aging (Albany NY), 2024 Apr 10. PMID 38613803, Free PMC Article
    2. The genetic architecture of economic and political preferences. Benjamin DJ, et al. Proc Natl Acad Sci U S A, 2012 May 22. PMID 22566634, Free PMC Article
    3. Genetics of coronary artery calcification among African Americans, a meta-analysis. Wojczynski MK, et al. BMC Med Genet, 2013 Jul 19. PMID 23870195, Free PMC Article
    4. Genome-wide association study of chronic periodontitis in a general German population. Teumer A, et al. J Clin Periodontol, 2013 Nov. PMID 24024966
    5. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. lincRNA00907 promotes NASH progression by targeting miRNA-942-5p/TAOK1.
      Title: lincRNA00907 promotes NASH progression by targeting miRNA-942-5p/TAOK1.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genetics of coronary artery calcification among African Americans, a meta-analysis.
    EBI GWAS Catalog
    Genome-wide association study of chronic periodontitis in a general German population.
    EBI GWAS Catalog
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog
    The genetic architecture of economic and political preferences.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046174.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) consists of most exons.
      Source sequence(s)
      AB593074, AC090239, BC021928
      Related
      ENST00000589068.5

    2. NR_046454.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and has a shorter and distinct 3' sequence, compared to variant 1.
      Source sequence(s)
      AC090239, BC040725
      Related
      ENST00000585639.5

    3. NR_046456.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) has an additional internal exon and a longer and distinct 3' sequence, compared to variant 1.
      Source sequence(s)
      AB593072, AB593074, AC015670, AC090239
      Related
      ENST00000593234.5

    4. NR_046457.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in an internal region and the 3' region, compared to variant 1.
      Source sequence(s)
      AB593075, AC015670, AC090239
      Related
      ENST00000593051.6

    5. NR_046458.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) has a shorter and distinct 3' sequence, compared to variant 1.
      Source sequence(s)
      AB593074, AC090239

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      42186668..42691426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      42378345..42883242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_046455.1: Suppressed sequence

      Description
      NR_046455.1: This RefSeq was removed because it is primarily intronic sequence.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.