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    TTLL7-IT1 TTLL7 intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100874314, updated on 12-Sep-2024

    Summary

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    Official Symbol
    TTLL7-IT1provided by HGNC
    Official Full Name
    TTLL7 intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:41486
    See related
    Ensembl:ENSG00000233061 AllianceGenome:HGNC:41486
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See TTLL7-IT1 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (83979118..83984300, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (83819515..83824697, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (84444801..84449983, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985043 Neighboring gene long intergenic non-protein coding RNA 1725 Neighboring gene ARF GTPase 4 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:84157955-84158489 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:84158490-84159025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1009 Neighboring gene uncharacterized LOC101927560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1011 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1010 Neighboring gene tubulin tyrosine ligase like 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1013 Neighboring gene uncharacterized LOC124904205 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:84543332-84543857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1015 Neighboring gene protein kinase cAMP-activated catalytic subunit beta Neighboring gene TXN2 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • TTLL7 intronic transcript 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046841.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104454
      Related
      ENST00000455929.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      83979118..83984300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      83819515..83824697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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