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    ZSCAN12P1 zinc finger and SCAN domain containing 12 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 221584, updated on 17-Sep-2024

    Summary

    Official Symbol
    ZSCAN12P1provided by HGNC
    Official Full Name
    zinc finger and SCAN domain containing 12 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:13850
    See related
    AllianceGenome:HGNC:13850
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZNF96L1; ZNF96P1; ZNF187p1; ZNF305P1; ZSCAN12L1; dJ313I6.7
    Expression
    Broad expression in testis (RPKM 1.4), endometrium (RPKM 0.7) and 24 other tissues See more
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    Genomic context

    See ZSCAN12P1 in Genome Data Viewer
    Location:
    6p22.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (28090807..28095715)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27960826..27965734)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (28058585..28063493)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 1 subfamily F member 12, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24341 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24342 Neighboring gene zinc finger protein 165 Neighboring gene zinc finger protein 601, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24343 Neighboring gene MPRA-validated peak5744 silencer Neighboring gene zinc finger protein 602, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • zinc finger and SCAN domain containing 12-like 1
    • zinc finger protein 305 pseudogene 1
    • zinc finger protein 96 pseudogene 1
    • zinc finger protein 96-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024063.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK127188, BC040524, BU632557

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      28090807..28095715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      27960826..27965734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)