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    FAM169BP family with sequence similarity 169 member B, pseudogene [ Homo sapiens (human) ]

    Gene ID: 283777, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FAM169BPprovided by HGNC
    Official Full Name
    family with sequence similarity 169 member B, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:26835
    See related
    Ensembl:ENSG00000293555 AllianceGenome:HGNC:26835
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM169B
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    mouse all
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    Genomic context

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    See FAM169BP in Genome Data Viewer
    Location:
    15q26.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (98437162..98514336, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (96201545..96278778, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (98980391..99057565, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371010 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:98721449-98722648 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42793 Neighboring gene NANOG hESC enhancer GRCh37_chr15:98775748-98776249 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:98776351-98777550 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:98800245-98801098 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42822 Neighboring gene long intergenic non-protein coding RNA 2351 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:98957206-98958405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98959168-98959668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98959669-98960169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:98964233-98964808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98965386-98965961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10139 Neighboring gene Sharpr-MPRA regulatory regions 4169 and 6096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6853 Neighboring gene zinc finger CCHC-type containing 9 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99031875-99032074 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99056319-99056501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99122390-99122890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99122891-99123391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99135615-99136114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99143220-99143720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99143721-99144221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99148269-99148769 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99189870-99190491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6855 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6857 Neighboring gene Sharpr-MPRA regulatory region 7544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99204502-99205312 Neighboring gene Sharpr-MPRA regulatory region 1749 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:99211661-99212860 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:99213965-99214690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99243457-99243958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99243959-99244458 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99247546-99247726 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99256117-99256819 Neighboring gene VISTA enhancer hs1932 Neighboring gene IGF1R antisense imprinted non-protein coding RNA Neighboring gene insulin like growth factor 1 receptor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:99277618-99278148 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99301249-99301750 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99301751-99302250 Neighboring gene uncharacterized LOC124903560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99316261-99316843 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99316844-99317425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99319525-99320432 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99320433-99321339

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. Thompson SD, et al. Arthritis Rheum, 2012 Aug. PMID 22354554, Free PMC Article
    2. Genome-wide population-based association study of extremely overweight young adults--the GOYA study. Paternoster L, et al. PLoS One, 2011. PMID 21935397, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.
    EBI GWAS Catalog
    Genome-wide population-based association study of extremely overweight young adults--the GOYA study.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • family with sequence similarity 169 member B
    • protein FAM169B

    Clone Names

    • FLJ39743

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171054.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC103968
      Related
      ENST00000558256.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      98437162..98514336 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      96201545..96278778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182562.3: Suppressed sequence

      Description
      NM_182562.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8N8A8.3 GenPept UniProtKB/Swiss-Prot:Q8N8A8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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