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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029717.2 RefSeqGene
- Range
-
144066..257131
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001130480.2 → NP_001123952.1 serine/threonine-protein kinase VRK2 isoform 1
See identical proteins and their annotated locations for NP_001123952.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 8 encode the same isoform (1, also known as VRK2A).
- Source sequence(s)
-
AB000450, AK223540, AK311205, DB227029
- Consensus CDS
-
CCDS1859.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
-
NM_001130481.2 → NP_001123953.1 serine/threonine-protein kinase VRK2 isoform 1
See identical proteins and their annotated locations for NP_001123953.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, and 8 encode the same isoform (1, also known as VRK2A).
- Source sequence(s)
-
AK311205, AY228367, BC027854
- Consensus CDS
-
CCDS1859.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
-
NM_001130482.2 → NP_001123954.1 serine/threonine-protein kinase VRK2 isoform 2
See identical proteins and their annotated locations for NP_001123954.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AK223540, AK311205, AY228369, DB227029
- Consensus CDS
-
CCDS46292.1
- UniProtKB/TrEMBL
-
Q05CR6
- Related
- ENSP00000398323.2, ENST00000440705.6
- Conserved Domains (2) summary
-
- COG0515
Location:6 → 398
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cl21453
Location:1 → 291
- PKc_like; Protein Kinases, catalytic domain
-
NM_001130483.2 → NP_001123955.1 serine/threonine-protein kinase VRK2 isoform 3
See identical proteins and their annotated locations for NP_001123955.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and contains an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (3) has a shorter and distinct C-terminus, compared to isoform 1. Variants 5 and 9 encode the same isoform (3, also known as VRK2B).
- Source sequence(s)
-
AK311205, AY228372, DB227029
- Consensus CDS
-
CCDS46291.1
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (1) summary
-
- cl21453
Location:16 → 314
- PKc_like; Protein Kinases, catalytic domain
-
NM_001288836.1 → NP_001275765.1 serine/threonine-protein kinase VRK2 isoform 4
See identical proteins and their annotated locations for NP_001275765.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses an alternate splice site and contains an alternate exon in the 5' region, compared to variant 1. It initiates translation at a downstream in-frame start codon. The encoded isoform (4) has a shorter N-terminus than isoform 1. Variants 6 and 7 encode the same isoform (4).
- Source sequence(s)
-
AK296611, AK311205, DB227029
- Consensus CDS
-
CCDS46293.1
- UniProtKB/Swiss-Prot
-
Q86Y07
- Conserved Domains (2) summary
-
- COG0515
Location:1 → 303
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cl21453
Location:1 → 196
- PKc_like; Protein Kinases, catalytic domain
-
NM_001288837.2 → NP_001275766.1 serine/threonine-protein kinase VRK2 isoform 1
See identical proteins and their annotated locations for NP_001275766.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) represents use of an alternate upstream promoter and differs in the 5' UTR, compared to variant 1. Variants 1, 2, 3, and 8 encode the same isoform (1, also known as VRK2A).
- Source sequence(s)
-
AC068193, AK307113, AK311205, BC036434
- Consensus CDS
-
CCDS1859.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Related
- ENSP00000408002.2, ENST00000435505.6
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
-
NM_001288838.2 → NP_001275767.1 serine/threonine-protein kinase VRK2 isoform 3
See identical proteins and their annotated locations for NP_001275767.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) represents use of an alternate upstream promoter, differs in the 5' UTR, and contains an alternate exon in the 3' coding region, which results in a frameshift, compared to variant 1. The encoded isoform (3) has a shorter and distinct C-terminus, compared to isoform 1. Variants 5 and 9 encode the same isoform (3, also known as VRK2B).
- Source sequence(s)
-
AC068193, AK292727, AK311205, AY228372, BC036434
- Consensus CDS
-
CCDS46291.1
- UniProtKB/TrEMBL
-
Q05CR6
- Related
- ENSP00000402375.2, ENST00000417641.6
- Conserved Domains (1) summary
-
- cl21453
Location:16 → 314
- PKc_like; Protein Kinases, catalytic domain
-
NM_001288839.2 → NP_001275768.1 serine/threonine-protein kinase VRK2 isoform 4
See identical proteins and their annotated locations for NP_001275768.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks an exon in the 5' region, compared to variant 1, and initiates translation at a downstream in-frame start codon. The encoded isoform (4) has a shorter N-terminus than isoform 1. Variants 6 and 7 encode the same isoform (4).
- Source sequence(s)
-
AC007250, AC073215, AY228371
- Consensus CDS
-
CCDS46293.1
- UniProtKB/Swiss-Prot
-
Q86Y07
- Related
- ENSP00000404156.3, ENST00000412104.6
- Conserved Domains (2) summary
-
- COG0515
Location:1 → 303
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cl21453
Location:1 → 196
- PKc_like; Protein Kinases, catalytic domain
-
NM_006296.7 → NP_006287.2 serine/threonine-protein kinase VRK2 isoform 1
See identical proteins and their annotated locations for NP_006287.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 2, 3, and 8 encode the same isoform (1, also known as VRK2A).
- Source sequence(s)
-
AK223540, BC027854
- Consensus CDS
-
CCDS1859.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Related
- ENSP00000342381.4, ENST00000340157.9
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
57907592..58159920
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005264540.5 → XP_005264597.1 serine/threonine-protein kinase VRK2 isoform X1
See identical proteins and their annotated locations for XP_005264597.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
-
XM_006712091.5 → XP_006712154.1 serine/threonine-protein kinase VRK2 isoform X3
See identical proteins and their annotated locations for XP_006712154.1
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (1) summary
-
- cl21453
Location:16 → 314
- PKc_like; Protein Kinases, catalytic domain
-
XM_006712090.5 → XP_006712153.1 serine/threonine-protein kinase VRK2 isoform X2
See identical proteins and their annotated locations for XP_006712153.1
- UniProtKB/TrEMBL
-
Q05CR6
- Related
- ENSP00000497378.1, ENST00000648897.1
- Conserved Domains (1) summary
-
- cl21453
Location:16 → 314
- PKc_like; Protein Kinases, catalytic domain
-
XM_011533092.4 → XP_011531394.1 serine/threonine-protein kinase VRK2 isoform X1
See identical proteins and their annotated locations for XP_011531394.1
- UniProtKB/Swiss-Prot
- B4DKL0, D6W5D4, D6W5D6, Q49AK9, Q53EU9, Q53S39, Q53S77, Q53TU1, Q86Y07, Q86Y08, Q86Y09, Q86Y10, Q86Y11, Q86Y12, Q8IXI5, Q99987
- UniProtKB/TrEMBL
-
Q05CR6
- Conserved Domains (2) summary
-
- COG0515
Location:29 → 421
- SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
- cd14123
Location:16 → 314
- STKc_VRK2; Catalytic domain of the Serine/Threonine protein kinase, Vaccinia Related Kinase 2
-
XM_047445748.1 → XP_047301704.1 serine/threonine-protein kinase VRK2 isoform X4
-
XM_047445747.1 → XP_047301703.1 serine/threonine-protein kinase VRK2 isoform X4
-
XM_047445745.1 → XP_047301701.1 serine/threonine-protein kinase VRK2 isoform X4
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
57912292..58164754
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054343751.1 → XP_054199726.1 serine/threonine-protein kinase VRK2 isoform X1
-
XM_054343754.1 → XP_054199729.1 serine/threonine-protein kinase VRK2 isoform X3
- UniProtKB/TrEMBL
-
A8K9L2
-
XM_054343753.1 → XP_054199728.1 serine/threonine-protein kinase VRK2 isoform X2
-
XM_054343752.1 → XP_054199727.1 serine/threonine-protein kinase VRK2 isoform X1
-
XM_054343757.1 → XP_054199732.1 serine/threonine-protein kinase VRK2 isoform X4
-
XM_054343756.1 → XP_054199731.1 serine/threonine-protein kinase VRK2 isoform X4
-
XM_054343755.1 → XP_054199730.1 serine/threonine-protein kinase VRK2 isoform X4