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    CTSLP2 cathepsin L pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 1517, updated on 17-Sep-2024

    Summary

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    Official Symbol
    CTSLP2provided by HGNC
    Official Full Name
    cathepsin L pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:2540
    See related
    AllianceGenome:HGNC:2540
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTSLL2; CTSLL5; CTSLL7; CTSLP5; CTSLP7; CTSL1P2; CTSL1P5; CTSL1P7; bA144G6.6; bA342C24.4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CTSLP2 in Genome Data Viewer
    Location:
    10q11.22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (47580671..47583419, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (48471987..48474737, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48155943..48158691)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BMS1P2-AGAP9 readthrough Neighboring gene annexin A8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3328 Neighboring gene BMS1 pseudogene 2 Neighboring gene glutamate dehydrogenase 1 pseudogene 6 Neighboring gene dual specificity phosphatase 8 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2675 Neighboring gene RNA, 7SL, cytoplasmic 453, pseudogene Neighboring gene shieldin complex subunit 2 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A novel family of cathepsin L-like (CTSLL) sequences on human chromosome 10q and related transcripts. Bryce SD, et al. Genomics, 1994 Dec. PMID 7713509

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • cathepsin L pseudogene 5
    • cathepsin L pseudogene 7
    • cathepsin L-like 2
    • cathepsin L1 pseudogene 2
    • cathepsin L1 pseudogene 5
    • cathepsin L1 pseudogene 7

    Clone Names

    • FLJ99150, KIAA0187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033407.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK309109, BX547991

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      47580671..47583419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      48471987..48474737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_005638.2: Suppressed sequence

      Description
      NG_005638.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NG_021156.1: Suppressed sequence

      Description
      NG_021156.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials