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    LINC02538 long intergenic non-protein coding RNA 2538 [ Homo sapiens (human) ]

    Gene ID: 401286, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02538provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2538provided by HGNC
    Primary source
    HGNC:HGNC:53571
    See related
    Ensembl:ENSG00000272549 AllianceGenome:HGNC:53571
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02538 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167666840..167679223, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169004438..169016821, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (168067520..168079903, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378130 Neighboring gene uncharacterized LOC105378131 Neighboring gene MPRA-validated peak6319 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168052990-168053978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168072861-168073360 Neighboring gene uncharacterized LOC124901465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168085935-168086436 Neighboring gene long intergenic non-protein coding RNA 2487 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168103963-168104504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168108302-168109023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168109024-168109744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168113086-168113654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168113655-168114223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168123500-168124015 Neighboring gene uncharacterized LOC107986547

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_117091.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356123
      Related
      ENST00000609107.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      167666840..167679223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      169004438..169016821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)