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    VIP5 plus-3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842395, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VIP5
    Official Full Name
    plus-3 domain-containing protein
    Primary source
    TAIR:AT1G61040
    Locus tag
    AT1G61040
    See related
    Araport:AT1G61040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7P1.17; T7P1_17; vernalization independence 5
    Summary
    Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family.
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    Genomic context

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    See VIP5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (22483104..22485969)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene WAPL (Wings apart-like protein regulation of heterochromatin) protein Neighboring gene alpha 1,4-glycosyltransferase family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana. Lu C, et al. Plant Cell, 2017 Feb. PMID 28188267, Free PMC Article
    2. A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family. Oh S, et al. Plant Cell, 2004 Nov. PMID 15472079, Free PMC Article
    3. PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin. Park S, et al. Plant Physiol, 2010 Jun. PMID 20363855, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The phosphorylation of SPT5 by CDKD;2 enables it to recruit VIP5 to regulate chromatin and transcription in Arabidopsis.
      Title: Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_104784.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of flower development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plus-3 domain-containing protein
    NP_176299.1
    • vernalization independence 5 (VIP5); FUNCTIONS IN: DNA binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343); Has 7244 Blast hits to 3723 proteins in 490 species: Archae - 2; Bacteria - 3364; Metazoa - 2087; Fungi - 627; Plants - 250; Viruses - 32; Other Eukaryotes - 882 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22483104..22485969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333926.1 → NP_001322667.1  plus-3 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWR3, Q9C950
      UniProtKB/TrEMBL
      A0A178WDP6, A0A5S9WR26
      Conserved Domains (2) summary
      smart00719
      Location:261 → 372
      Plus3; Short conserved domain in transcriptional regulators
      COG5296
      Location:70 → 516
      COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]

    2. NM_001333927.1 → NP_001322666.1  plus-3 domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWR3, Q9C950
      UniProtKB/TrEMBL
      A0A178WDP6, A0A5S9WR26
      Conserved Domains (2) summary
      smart00719
      Location:261 → 372
      Plus3; Short conserved domain in transcriptional regulators
      COG5296
      Location:70 → 516
      COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]

    3. NM_104784.4 → NP_176299.1  plus-3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176299.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWR3, Q9C950
      UniProtKB/TrEMBL
      A0A178WDP6, A0A5S9WR26
      Conserved Domains (2) summary
      smart00719
      Location:261 → 372
      Plus3; Short conserved domain in transcriptional regulators
      COG5296
      Location:70 → 516
      COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C950.1

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