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    LINC00491 long intergenic non-protein coding RNA 491 [ Homo sapiens (human) ]

    Gene ID: 285708, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00491provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 491provided by HGNC
    Primary source
    HGNC:HGNC:43428
    See related
    Ensembl:ENSG00000250682 AllianceGenome:HGNC:43428
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00491 in Genome Data Viewer
    Location:
    5q21.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (102608492..102671464, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (103116594..103179563, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (101944196..102007168, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901035 Neighboring gene uncharacterized LOC124901036 Neighboring gene long intergenic non-protein coding RNA 492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:101996845-101997345 Neighboring gene VISTA enhancer hs1649 Neighboring gene uncharacterized LOC105379104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16207 Neighboring gene NANOG hESC enhancer GRCh37_chr5:102085276-102085842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:102090038-102090563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16208 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:102091571-102092071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22856 Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16209 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:102363594-102364793 Neighboring gene eukaryotic translation initiation factor 3 subunit K pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103753.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC099487, DA458115, DA458823
      Related
      ENST00000513815.2
    2. NR_103754.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and contains two alternate internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC099487, CN270888, DA458823
      Related
      ENST00000505527.6
    3. NR_103755.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon and contains an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC099487, DA458823
      Related
      ENST00000508339.2
    4. NR_103756.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an internal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC099487, BG777293, DA458823

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      102608492..102671464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      103116594..103179563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)