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    MAGI2-AS3 MAGI2 antisense RNA 3 [ Homo sapiens (human) ]

    Gene ID: 100505881, updated on 22-Oct-2024

    Summary

    Official Symbol
    MAGI2-AS3provided by HGNC
    Official Full Name
    MAGI2 antisense RNA 3provided by HGNC
    Primary source
    HGNC:HGNC:40862
    See related
    Ensembl:ENSG00000234456 AllianceGenome:HGNC:40862
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in fat (RPKM 9.7), ovary (RPKM 7.7) and 23 other tissues See more
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    Genomic context

    See MAGI2-AS3 in Genome Data Viewer
    Location:
    7q21.11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (79452957..79471208)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (80704760..80722989)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (79082273..79100524)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene uncharacterized LOC124901823 Neighboring gene RNA, U6 small nuclear 530, pseudogene Neighboring gene Sharpr-MPRA regulatory region 13814 Neighboring gene uncharacterized LOC105375369 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:79275496-79276123 Neighboring gene nucleoporin 35 pseudogene 2 Neighboring gene RNA, 5S ribosomal pseudogene 234

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • MAGI2 antisense RNA 3 (non-protein coding)

    Clone Names

    • DKFZp686F08110

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038343.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC004945, AK311103, BI521274, GD146486
    2. NR_038344.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks the 3' exon and includes two alternate 3' exons, compared to variant 1.
      Source sequence(s)
      BI521274, BQ008953, CN311982
      Related
      ENST00000414797.8
    3. NR_038345.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two 5' and the 3' exons and includes an alternate 5' and two alternate 3' exons, compared to variant 1.
      Source sequence(s)
      AB371456, BQ008953, DA758742
      Related
      ENST00000426835.7
    4. NR_038346.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks two 5' and the 3' exons and includes two alternate 5' and an alternate 3' exons, compared to variant 1.
      Source sequence(s)
      BI868593, BQ008953, DA758742
      Related
      ENST00000849244.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      79452957..79471208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      80704760..80722989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)