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    PF3D7_1035000 U2 snRNA/tRNA pseudouridine synthase, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810498, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1035000
    Gene description
    U2 snRNA/tRNA pseudouridine synthase, putative
    Locus tag
    PF3D7_1035000
    See related
    PlasmoDB:PF3D7_1035000; VEuPathDB:PF3D7_1035000
    Gene type
    protein coding
    RNA name
    U2 snRNA/tRNA pseudouridine synthase, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1035000 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Sequence:
    Chromosome: 10; NC_037281.1 (1386649..1389630, complement)

    Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene conserved protein, unknown function Neighboring gene methionine--tRNA ligase Neighboring gene probable protein, unknown function Neighboring gene S-antigen

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037281.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables pseudouridine synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA pseudouridine synthesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within snRNA pseudouridine synthesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    U2 snRNA/tRNA pseudouridine synthase, putative
    XP_001347625.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037281.1 Reference assembly

      Range
      1386649..1389630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347589.1 → XP_001347625.1  U2 snRNA/tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347625.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0BR23, Q8IJ59, W7JS12
      Conserved Domains (2) summary
      cd02576
      Location:444 → 991
      PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
      cl00130
      Location:24 → 52
      PseudoU_synth; Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi)
    Nucleotide Protein
    Heading Accession and Version

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