U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1006100 CCR4-NOT transcription complex subunit 5, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810220, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1006100
    Gene description
    CCR4-NOT transcription complex subunit 5, putative
    Primary source
    PlasmoDB:PF3D7_1006100
    Locus tag
    PF3D7_1006100
    See related
    VEuPathDB:PF3D7_1006100
    Gene type
    protein coding
    RNA name
    CCR4-NOT transcription complex subunit 5, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1006100 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Sequence:
    Chromosome: 10; NC_037281.1 (259060..260304, complement)

    Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene conserved protein, unknown function Neighboring gene IMP1-like protein, putative Neighboring gene DNA/RNA-binding protein Alba 3 Neighboring gene conserved Plasmodium protein, unknown function

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037281.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex. Hart KJ, et al. PLoS Pathog, 2019 Jan. PMID 30703164, Free PMC Article
    2. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Component Evidence Code Pubs
    part_of CCR4-NOT complex ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CCR4-NOT transcription complex subunit 5, putative

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037281.1 Reference assembly

      Range
      259060..260304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024473275.1 → XP_024329086.1  CCR4-NOT transcription complex subunit 5, putative [Plasmodium falciparum 3D7]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0L1I4J2, A0A143ZX72, A0A2I0BRB9
      Conserved Domains (1) summary
      COG5665
      Location:53 → 174
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials