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    PF3D7_1107000 U6 snRNA-associated Sm-like protein LSm4, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810633, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1107000
    Gene description
    U6 snRNA-associated Sm-like protein LSm4, putative
    Locus tag
    PF3D7_1107000
    See related
    PlasmoDB:PF3D7_1107000; VEuPathDB:PF3D7_1107000
    Gene type
    protein coding
    RNA name
    U6 snRNA-associated Sm-like protein LSm4, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1107000 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Sequence:
    Chromosome: 11; NC_037282.1 (291680..292502)

    Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene pseudo-tyrosine kinase-like protein Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene nucleic acid binding protein, putative Neighboring gene conserved protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037282.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables U6 snRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus HDA PubMed 
    part_of sno(s)RNA-containing ribonucleoprotein complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm4, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037282.1 Reference assembly

      Range
      291680..292502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347721.2 → XP_001347757.2  U6 snRNA-associated Sm-like protein LSm4, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347757.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024W6C1, A0A0L1IE46, Q8IIT3, W4IGY2, W4IRT4, W7K439
      Conserved Domains (1) summary
      cd01723
      Location:3 → 78
      LSm4; Like-Sm protein 4
    Nucleotide Protein
    Heading Accession and Version

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