U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1100300 rifin [ Plasmodium falciparum 3D7 ]

    Gene ID: 810583, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1100300
    Gene description
    rifin
    Primary source
    PlasmoDB:PF3D7_1100300
    Locus tag
    PF3D7_1100300
    See related
    VEuPathDB:PF3D7_1100300
    Gene type
    protein coding
    RNA name
    rifin
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1100300 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Sequence:
    Chromosome: 11; NC_037282.1 (45056..46233)

    Chromosome 11 - NC_037282.1Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein 1, PfEMP1 Neighboring gene erythrocyte membrane protein 1, PfEMP1 Neighboring gene rifin Neighboring gene rifin

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037282.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RIFINs are adhesins implicated in severe Plasmodium falciparum malaria. Goel S, et al. Nat Med, 2015 Apr. PMID 25751816
    2. Rifins: a second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum. Kyes SA, et al. Proc Natl Acad Sci U S A, 1999 Aug 3. PMID 10430943, Free PMC Article
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within adhesion of symbiont to microvasculature IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within antigenic variation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within modulation by symbiont of host erythrocyte aggregation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Maurer's cleft IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in host cell plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in symbiont-containing vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    rifin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037282.1 Reference assembly

      Range
      45056..46233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347657.1 → XP_001347693.1  rifin [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347693.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0C0E6, Q8IIZ3, W7KES5
      Conserved Domains (1) summary
      PTZ00046
      Location:1 → 340
      PTZ00046; rifin; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials