U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1338200 60S ribosomal protein L6, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 814180, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1338200
    Gene description
    60S ribosomal protein L6, putative
    Locus tag
    PF3D7_1338200
    See related
    PlasmoDB:PF3D7_1338200; VEuPathDB:PF3D7_1338200
    Gene type
    protein coding
    RNA name
    60S ribosomal protein L6, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1338200 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Sequence:
    Chromosome: 13; NC_004331.3 (1545070..1545735, complement)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene LMBR1 domain-containing protein, putative Neighboring gene 26S proteasome regulatory subunit RPN3, putative Neighboring gene elongation factor 1-gamma, putative Neighboring gene SprT-like domain-containing protein, putative

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Wong W, et al. Elife, 2014 Jun 9. PMID 24913268, Free PMC Article
    2. Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome. Abdi A, et al. Wellcome Open Res, 2017. PMID 28944300, Free PMC Article
    3. Functional Characterization of the m(6)A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Sinha A, et al. mBio, 2021 Apr 27. PMID 33906926, Free PMC Article
    4. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    5. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytoplasmic translation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in extracellular vesicle HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    60S ribosomal protein L6, putative

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      1545070..1545735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001350073.1 → XP_001350109.1  60S ribosomal protein L6, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001350109.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V3L9, A0A024VNK1, A0A024W3E3, A0A024WJU7, A0A024X1M7, A0A0L1IHY3, A0A0L7KCY9, A0A0L7M5R7, A0A5K1K8V8, W4IBK4, W4IZT3, W7F2U0, W7FC50, W7JIF4, W7JPM2
      Conserved Domains (1) summary
      cl00354
      Location:47 → 221
      KOW; an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    1VX7_I.1
    3J79_I.1
    5UMD_I.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials