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    PF3D7_1307000 exosome complex component RRP40, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 813925, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1307000
    Gene description
    exosome complex component RRP40, putative
    Locus tag
    PF3D7_1307000
    See related
    PlasmoDB:PF3D7_1307000; VEuPathDB:PF3D7_1307000
    Gene type
    protein coding
    RNA name
    exosome complex component RRP40, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1307000 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    3
    Sequence:
    Chromosome: 13; NC_004331.3 (325215..326371, complement)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene RED-like protein, putative Neighboring gene U1 small nuclear ribonucleoprotein A, putative Neighboring gene U3 small nucleolar RNA-associated protein 6, putative Neighboring gene DnaJ protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Disruption of the RNA exosome reveals the hidden face of the malaria parasite transcriptome. Droll D, et al. RNA Biol, 2018. PMID 30235972, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of exosome (RNase complex) IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component RRP40, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      325215..326371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001349761.1 → XP_001349797.1  exosome complex component RRP40, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001349797.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V253, A0A024W385, A0A024WKR9, A0A024X3Q2, A0A0L1I5C3, A0A0L7KFL3, A0A2I0BW06, Q8IEP5, W4IC24, W4IXS2, W7F7V3, W7FPX3, W7JTQ3
      Conserved Domains (2) summary
      COG1097
      Location:66 → 211
      Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
      cl00098
      Location:161 → 237
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version

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