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    PF3D7_1314900 general transcription factor IIH subunit 2 [ Plasmodium falciparum 3D7 ]

    Gene ID: 813966, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1314900
    Gene description
    general transcription factor IIH subunit 2
    Locus tag
    PF3D7_1314900
    See related
    PlasmoDB:PF3D7_1314900; VEuPathDB:PF3D7_1314900
    Gene type
    protein coding
    RNA name
    general transcription factor IIH subunit 2
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1314900 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Sequence:
    Chromosome: 13; NC_004331.3 (632336..634510)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene pinin/SDK/MemA domain-containing protein, putative Neighboring gene ubiquitin-like protein, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene serine/threonine protein kinase PK9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plasmodium falciparum XPD translocates in 5' to 3' direction, is expressed throughout the blood stages, and interacts with p44. Tajedin L, et al. Protoplasma, 2015 Nov. PMID 25708921

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor IIH subunit 2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      632336..634510
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001349849.1 → XP_001349885.1  general transcription factor IIH subunit 2 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001349885.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V2F0, A0A024VFA6, A0A024W351, A0A0L7KIC0, A0A2I0BVX0, M9VUH5, Q8IEG6, W4IB32, W4IXI0, W7EWY6, W7FTX8, W7J7A6
      Conserved Domains (2) summary
      smart01047
      Location:357 → 396
      C1_4; TFIIH C1-like domain
      cd01453
      Location:81 → 266
      vWA_transcription_factor_IIH_type; Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins ...
    Nucleotide Protein
    Heading Accession and Version

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