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    PF3D7_1352700 intron-binding protein aquarius, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 814238, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1352700
    Gene description
    intron-binding protein aquarius, putative
    Locus tag
    PF3D7_1352700
    See related
    PlasmoDB:PF3D7_1352700; VEuPathDB:PF3D7_1352700
    Gene type
    protein coding
    RNA name
    intron-binding protein aquarius, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1352700 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Sequence:
    Chromosome: 13; NC_004331.3 (2101485..2109086)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene thioredoxin-related protein, putative Neighboring gene protein kinase, putative Neighboring gene vacuolar fusion protein MON1, putative Neighboring gene Plasmodium exported protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    intron-binding protein aquarius, putative
    XP_001350239.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      2101485..2109086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001350203.1 → XP_001350239.1  intron-binding protein aquarius, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001350239.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024X196, Q8IDH3, W4J206, W7K0K0
      Conserved Domains (3) summary
      cd18808
      Location:2292 → 2471
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      pfam16399
      Location:636 → 1311
      Aquarius_N; Intron-binding protein aquarius N-terminus
      cl28899
      Location:2185 → 2304
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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