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    PF3D7_1406200 transcription elongation factor SPT6, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 811641, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1406200
    Gene description
    transcription elongation factor SPT6, putative
    Locus tag
    PF3D7_1406200
    See related
    PlasmoDB:PF3D7_1406200; VEuPathDB:PF3D7_1406200
    Gene type
    protein coding
    RNA name
    transcription elongation factor SPT6, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1406200 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Sequence:
    Chromosome: 14; NC_037283.1 (217845..226307)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 8A, putative Neighboring gene tubby domain-containing protein, putative Neighboring gene glycerophosphodiester phosphodiesterase Neighboring gene pentatricopeptide repeat domain-containing protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT6, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      217845..226307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348196.1 → XP_001348232.1  transcription elongation factor SPT6, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348232.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0C2N0, Q8IM32
      Conserved Domains (3) summary
      cd09918
      Location:2558 → 2654
      SH2_Nterm_SPT6_like; N-terminal Src homology 2 (SH2) domain found in Spt6
      pfam14632
      Location:355 → 392
      SPT6_acidic; Acidic N-terminal SPT6
      cl22429
      Location:2060 → 2159
      HHH_5; Helix-hairpin-helix domain
    Nucleotide Protein
    Heading Accession and Version

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