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    PF3D7_0413900 ubiquitin carboxyl-terminal hydrolase 13, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 812575, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0413900
    Gene description
    ubiquitin carboxyl-terminal hydrolase 13, putative
    Locus tag
    PF3D7_0413900
    See related
    PlasmoDB:PF3D7_0413900; VEuPathDB:PF3D7_0413900
    Gene type
    protein coding
    RNA name
    ubiquitin carboxyl-terminal hydrolase 13, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0413900 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_004318.2 (623168..626226, complement)

    Chromosome 4 - NC_004318.2Genomic Context describing neighboring genes Neighboring gene lysine decarboxylase-like protein, putative Neighboring gene 50S ribosomal protein L10, putative Neighboring gene structural maintenance of chromosomes protein 3, putative Neighboring gene conserved Plasmodium membrane protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004318.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nedd8 hydrolysis by UCH proteases in Plasmodium parasites. Karpiyevich M, et al. PLoS Pathog, 2019 Oct. PMID 31658303, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    3. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables deubiquitinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ubiquitin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 13, putative
    XP_001351447.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004318.2 Reference assembly

      Range
      623168..626226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351411.1 → XP_001351447.1  ubiquitin carboxyl-terminal hydrolase 13, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351447.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024WC10, A0A024WVD7, A0A024XDX0, A0A0L1I421, A0A0L7KEG8, Q8I1U8, W4IMW2, W7G3K1, W7KB30
      Conserved Domains (1) summary
      COG5207
      Location:19 → 852
      UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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