U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_0413100 erythrocyte membrane protein 1, PfEMP1 [ Plasmodium falciparum 3D7 ]

    Gene ID: 4794155, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_0413100
    Gene description
    erythrocyte membrane protein 1, PfEMP1
    Locus tag
    PF3D7_0413100
    See related
    PlasmoDB:PF3D7_0413100; VEuPathDB:PF3D7_0413100
    Gene type
    protein coding
    RNA name
    erythrocyte membrane protein 1, PfEMP1
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_0413100 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_004318.2 (591949..599849, complement)

    Chromosome 4 - NC_004318.2Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein 1, PfEMP1 Neighboring gene ncRNA Neighboring gene rifin Neighboring gene rifin

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_004318.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Antigenic variation in Plasmodium falciparum. Scherf A, et al. Annu Rev Microbiol, 2008. PMID 18785843
    2. Variant antigens of Plasmodium falciparum encoded by the var multigenic family are multifunctional macromolecules. Nogueira PA, et al. Res Microbiol, 2001 Mar. PMID 11316367
    3. P. falciparum rosetting mediated by a parasite-variant erythrocyte membrane protein and complement-receptor 1. Rowe JA, et al. Nature, 1997 Jul 17. PMID 9230440
    4. Molecules on the surface of the Plasmodium falciparum infected erythrocyte and their role in malaria pathogenesis and immune evasion. Craig A, et al. Mol Biochem Parasitol, 2001 Jul. PMID 11420100
    5. A recombinant peptide based on PfEMP-1 blocks and reverses adhesion of malaria-infected red blood cells to CD36 under flow. Cooke BM, et al. Mol Microbiol, 1998 Oct. PMID 9786187

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables cell adhesion molecule binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within adhesion of symbiont to microvasculature TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within antigenic variation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within cell-cell adhesion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within modulation by symbiont of host erythrocyte aggregation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in host cell plasma membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in infected host cell surface knob TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    erythrocyte membrane protein 1, PfEMP1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004318.2 Reference assembly

      Range
      591949..599849 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351403.1 → XP_001351439.1  erythrocyte membrane protein 1, PfEMP1 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351439.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2I0BZT3, Q8I1V6
      Conserved Domains (5) summary
      PTZ00176
      Location:1 → 471
      PTZ00176; erythrocyte membrane protein 1 (PfEMP1); Provisional
      pfam03011
      Location:645 → 801
      PFEMP; PFEMP DBL domain
      pfam15445
      Location:1835 → 2326
      ATS; acidic terminal segments, variant surface antigen of PfEMP1
      pfam05424
      Location:116 → 326
      Duffy_binding; Duffy binding domain
      pfam18562
      Location:1497 → 1551
      CIDR1_gamma; Cysteine-Rich Interdomain Region 1 gamma
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials