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    PF3D7_0405400 pre-mRNA-processing-splicing factor 8, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 812426, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0405400
    Gene description
    pre-mRNA-processing-splicing factor 8, putative
    Locus tag
    PF3D7_0405400
    See related
    PlasmoDB:PF3D7_0405400; VEuPathDB:PF3D7_0405400
    Gene type
    protein coding
    RNA name
    pre-mRNA-processing-splicing factor 8, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0405400 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_004318.2 (291251..300976)

    Chromosome 4 - NC_004318.2Genomic Context describing neighboring genes Neighboring gene ag-1 blood stage membrane protein homologue Neighboring gene liver specific protein 2, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene TMEM33 domain-containing protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004318.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative proteomics and bioinformatic prediction enable a high-confidence apicoplast proteome in malaria parasites. Boucher MJ, et al. PLoS Biol, 2018 Sep. PMID 30212465, Free PMC Article
    2. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    3. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    4. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within RNA splicing, via transesterification reactions ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in apicoplast HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing-splicing factor 8, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004318.2 Reference assembly

      Range
      291251..300976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351330.1 → XP_001351366.1  pre-mRNA-processing-splicing factor 8, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351366.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8I1X5, W7JHL0, W7KLQ8
      Conserved Domains (2) summary
      smart00818
      Location:114 → 216
      Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
      COG5178
      Location:400 → 3135
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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