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    PF3D7_0821500 ribosomal RNA small subunit methyltransferase NEP1, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 2655492, updated on 12-Sep-2024

    Summary

    Gene symbol
    PF3D7_0821500
    Gene description
    ribosomal RNA small subunit methyltransferase NEP1, putative
    Locus tag
    PF3D7_0821500
    See related
    PlasmoDB:PF3D7_0821500; VEuPathDB:PF3D7_0821500
    Gene type
    protein coding
    RNA name
    ribosomal RNA small subunit methyltransferase NEP1, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PF3D7_0821500 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Sequence:
    Chromosome: 8; NC_004329.3 (967901..968740, complement)

    Chromosome 8 - NC_004329.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DHX36, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene polyribonucleotide 5'-hydroxyl-kinase Clp1, putative Neighboring gene 60S ribosomal protein L22, putative

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables rRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of small-subunit processome ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    ribosomal RNA small subunit methyltransferase NEP1, putative
    XP_001349310.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004329.3 Reference assembly

      Range
      967901..968740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001349274.1XP_001349310.1  ribosomal RNA small subunit methyltransferase NEP1, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001349310.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8IB49, W7FEI7, W7G7S2, W7JDQ1, W7KHD7
      Conserved Domains (1) summary
      cd18088
      Location:69273
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1