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    LINC00628 long intergenic non-protein coding RNA 628 [ Homo sapiens (human) ]

    Gene ID: 127841, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00628provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 628provided by HGNC
    Primary source
    HGNC:HGNC:27008
    See related
    Ensembl:ENSG00000280924 AllianceGenome:HGNC:27008
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC00628 in Genome Data Viewer
    Location:
    1q32.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (204368430..204369719, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (203632979..203634268, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (204337558..204338847, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 60 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204182987-204183643 Neighboring gene golgi transport 1A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204191229-204191730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204191731-204192230 Neighboring gene pleckstrin homology domain containing A6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204222775-204223276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204223277-204223776 Neighboring gene HNF1 motif-containing MPRA enhancer 91/92 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204244227-204245062 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:204251843-204252046 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:204252631-204253132 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:204253133-204253632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204264456-204265347 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204273055-204273675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204291013-204291512 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:204305671-204306454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204307239-204308022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204309736-204310344 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204317722-204318460 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204326340-204327267 Neighboring gene ribosomal protein L21 pseudogene 19 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204327268-204328194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204328310-204328945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204331933-204332486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2360 Neighboring gene small nuclear ribonucleoprotein F-like Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204379922-204380756 Neighboring gene protein phosphatase 1 regulatory subunit 15B

    Genomic regions, transcripts, and products

    Bibliography

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027022.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL606489
      Related
      ENST00000628516.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      204368430..204369719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      203632979..203634268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)